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deepclas4bioij's Introduction

DeepClas4BioIJ

DeepClas4BioIJ is an ImageJ plugin that connects ImageJ with the DeepClas4Bio API. This plugin allows ImageJ users to use deep learning techniques for object classification abstracting deep learning techniques details.

DeepClas4BioIJ has been built on top of SciJava Common using SciJava Commands.

Requirements

To use this plugin is necessary to have installed ImageJ with Java 8 and DeepClas4Bio API.

Installation

This plugin is updated in the ImageJ Update site and the recommendable way to install it is download the plugin using the ImageJ Update Site.

Using the plugin

In this section, we will see an example of how to use this plugin. For this example we will classify a lion image using the VGG16 model from the Keras framework. In addition, you can use the model and the framework that best suits to your problem. To use the plugin you must follow the following steps:

  1. Load the image that you want to classify Loading the image

  2. Run the plugin

Go to Plugins-->DeepClas4BioIJ

  1. Select the framework and the model you want use Select framework and model

  2. Visualize the output

Visualize the output

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