Comments (2)
you configuration file looks good. but to tell what are the best parameters, you will have to try out a few.
from soapdenovo2.
Hello, I am a person who just started to learn, and I would like to ask how to solve the following error after compiling?
pregraph_sparse_63mer.v1.0.3 cleaning done.
/bin/sh: g++: 未找到命令p...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc build_graph.cpp
/bin/sh: g++: 未找到命令...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc build_edge.cpp
/bin/sh: g++: 未找到命令cpp...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc multi_threads.cpp
/bin/sh: g++: 未找到命令pp...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc build_preArc.cpp
/bin/sh: g++: 未找到命令e.cpp...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc pregraph_sparse.cpp
/bin/sh: g++: 未找到命令
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc io_func.cpp
/bin/sh: g++: 未找到命令
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc global.cpp
/bin/sh: g++: 未找到命令novo.cpp...
Error in command: g++ -c -O3 -fomit-frame-pointer -w -D_63MER_ -m64 -I./inc convert_soapdenovo.cpp
pregraph_sparse_63mer.v1.0.3 objects generated.
SOAPdenovo-63mer cleaning done.
SOAPdenovo-63mer objects generated.
/bin/sh: g++: 未找到命令
make: *** [SOAPdenovo-63mer] 错误 127
from soapdenovo2.
Related Issues (20)
- operation HOT 6
- GapCloser: Segmentation fault (core dumped) HOT 1
- final link failed: Nonrepresentable section on output HOT 1
- soapaligner is not working HOT 5
- not resolved gaps of 1 nucleotide HOT 1
- Are the new releases really new releases? HOT 1
- question about the output file .scafSeq file when using SOAPdenovo2
- Getting the following Error during SOAPdenovo installation
- soap didn't read fastq files in Pregraph and Contig HOT 2
- Ran out of memory while applying -64982367872bytes
- compilation from source failed on debian11, gcc11.2 - patch added HOT 2
- Negative number of edges in pregraph
- SOAPdenovo2 installation error HOT 3
- SOAPdenovo parameter -K
- cgroup out-of-memory handler
- Using a compressed file during the "pregraph" process may lead to program exit
- Challenges with Scaffold Statistics in SOAPdenovo2 Assembly: Number_of_contigs_in_scaffolds
- cannot open *.kmerFreq file after pregraph, then exit
- get_scafSeq_to_fasta.pl script HOT 1
- compilation is not working on EL/rocky 9
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from soapdenovo2.