Comments (6)
cchd0001
commented on July 22, 2024
Could you please provide more details ?
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BAOjinbo
commented on July 22, 2024
I tried again
Here is my config_file
And this is my data position
I can't figure out what the problem is
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cchd0001
commented on July 22, 2024
Could you please provide the content of ass.log and ass.err ?
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BAOjinbo
commented on July 22, 2024
This is ass. log nothing
This is ass.err
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cchd0001
commented on July 22, 2024
Everything looks OK to me. Please check your read length ( need greater than 127 since you choose K=127 ).
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BAOjinbo
commented on July 22, 2024
Ok. I will try it. Thank you so much.
发自我的iPhone
…------------------ Original ------------------
From: Lidong ***@***.***>
Date: Tue,Apr 20,2021 8:09 AM
To: aquaskyline/SOAPdenovo2 ***@***.***>
Cc: BAOjinbo ***@***.***>, Author ***@***.***>
Subject: Re: [aquaskyline/SOAPdenovo2] operation (#76)
Everything looks OK to me. Please check your read length ( need greater than 127 since you choose K=127 ).
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Related Issues (20)
- Soap denovo with multiple libraries
- Tag r242 HOT 2
- About the err.txt HOT 2
- Dealing graph with too many edges HOT 1
- Empty fastq input results in infinite "air_return error" loop HOT 1
- GapCloser: Segmentation fault (core dumped) HOT 1
- final link failed: Nonrepresentable section on output HOT 1
- soapaligner is not working HOT 5
- not resolved gaps of 1 nucleotide HOT 1
- Are the new releases really new releases? HOT 1
- question about the output file .scafSeq file when using SOAPdenovo2
- Getting the following Error during SOAPdenovo installation
- soap didn't read fastq files in Pregraph and Contig HOT 2
- Ran out of memory while applying -64982367872bytes
- compilation from source failed on debian11, gcc11.2 - patch added
- Negative number of edges in pregraph
- SOAPdenovo2 installation error HOT 3
- SOAPdenovo parameter -K
- cgroup out-of-memory handler
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