bigdatabiology / santosjunior_torres_2024_ampsphere_v1 Goto Github PK

Hello!
When i run the scripts /general_scripts/01 resource_generation/main.py, it was said that

From prediction to families
Set up environment
Eliminating sequences containing non-standard residues
It was found a total of 9090033 AMPs
-- Filtering singletons:
Singletons: 3573672
Non-Singletons: 861565
Recovering AMPs matching to DRAMP but still singletons
There was a change in the versions of MMSeqs2.
                 This impacted the results in this step. Do you want to 
                 proceed the alignment? Alternatively, there is a pre-computed
                 set of results which can be used.
                 : 
Assuming the precomputed results
We could save 1933
Clustering AMPs
Hierarchical clustering started
		1st stage - 100% of identity
[ERROR] -- Cdhit Not Found --

I want to know how to slove this problem, if there have some files i have not download?
And which the mirror source was you used, i can not use the file enviroment.yml in my current mirror source

I am not a native English speaker and my word may be a little rude, Pardon me!(>﹏<)

l am looking foward to your reply!

Hello!
I'm a bit confused by the “file:///home/celio/Downloads/LinuxArtifacts/packages” at the beginning of the yml file, and I was not able to find out from you what this file is? I couldn't find your description of what this file is and what's in this folder, could you tell me more details, this PWD is a bit too localized, thanks a lot :)