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View Code? Open in Web Editor NEWA pipeline that calls variants on a group of BAM files. Category:Multi-Sample
Home Page: https://biowdl.github.io/gatk-variantcalling
License: MIT License
A pipeline that calls variants on a group of BAM files. Category:Multi-Sample
Home Page: https://biowdl.github.io/gatk-variantcalling
License: MIT License
Release checklist
wdl-aid --strict -t scripts/docs_template.md.j2 pipeline.wdl > docs/inputs.md
updateDocs.sh
) from develop
branch
gh-pages
branchgh-pages
gh-pages branch
git submodule foreach "git checkout master;git pull; git submodule foreach --recursive 'git fetch'; git submodule update --init --recursive"
git submodule
CHANGELOG.md
to stable version.release.sh
master
master
branch back into develop
.updateDocs.sh
) from master
branch
gh-pages
branchgh-pages
gh-pages branch
git submodule foreach "git checkout master;git pull; git submodule foreach --recursive 'git fetch'; git submodule update --init --recursive"
.git submodule
.wdl-aid --strict -t scripts/docs_template.md.j2 pipeline.wdl > docs/inputs.md
updateDocs.sh
) from develop
branch.
gh-pages
branch.gh-pages
.gh-pages branch
.CHANGELOG.md
to stable version.release.sh
.
master
.master
branch back into develop
.updateDocs.sh
) from master
branch.
gh-pages
branch.gh-pages
.gh-pages branch
.git checkout master && git submodule update --init --recursive
.
wdl-packager --reproducible -a LICENSE -a dockerImages.yml <WDL_FILE>
.<pipeline>_<version>.wdl
following the same naming as thegit submodule foreach "git checkout master;git pull; git submodule foreach --recursive 'git fetch'; git submodule update --init --recursive"
git submodule
wdl-aid --strict -t scripts/docs_template.md.j2 pipeline.wdl > docs/inputs.md
updateDocs.sh
) from develop
branch
gh-pages
branchgh-pages
gh-pages branch
CHANGELOG.md
to stable version.release.sh
master
master
branch back into develop
.updateDocs.sh
) from master
branch
gh-pages
branchgh-pages
gh-pages branch
git checkout master && git submodule update --init --recursive
wdl-packager --reproducible -a LICENSE -a dockerImages.yml <WDL_FILE>
<pipeline>_<version>.wdl
following the same naming as the package.Release checklist
git submodule foreach "git checkout master;git pull; git submodule foreach --recursive 'git fetch'; git submodule update --init --recursive"
git submodule
wdl-aid --strict -t scripts/docs_template.md.j2 pipeline.wdl > docs/inputs.md
updateDocs.sh
) from develop
branch
gh-pages
branchgh-pages
gh-pages branch
CHANGELOG.md
to stable version.release.sh
master
master
branch back into develop
.updateDocs.sh
) from master
branch
gh-pages
branchgh-pages
gh-pages branch
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