Comments (3)
This requires RUST, remember to add it to the DockerfileS dependencies
it requires also d4tools (conda install d4tools)
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As expected, Dockerfile is now broken because it's missing the pyd4 package. Here's what happens when you launch docker-compose up
:
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Installing of d4tools inside the Dockerfile take quite a long time (minutes). I think it would be best to create a base image already containing python, virtual env, rust and d4tools and use that to install this repo into. I'll do like this
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Related Issues (20)
- Codecov step broken in GitHub action
- On report page, add one more field to specify a list of completeness cutoffs for the stats HOT 1
- Completeness cutoff on report has no memory of submitted form when page is refreshed
- Js errors on report page
- Lib import error while connecting to MySQL using MacOS HOT 1
- Failed to load API definition for Chanjo2 API HOT 7
- On report page, customize search to allow also HGNC symbols and Ensembl IDs
- Server timeout when loading exons HOT 13
- Trouble getting /report calls to the correct end point, round 2 HOT 4
- Modify report endpoints to only accept forms and not json data?
- Detailed gene info in main report HOT 2
- Issues with customizing report through gene panel name HOT 3
- Occasionally large differences in coverage for same gene region in same sample HOT 11
- Can't install mysqlclient on macOS
- Warnings by the black (lint) action
- Startup errors crashing in log statement HOT 15
- Address security alerts
- Improve performance of get_coverage_completeness.py HOT 5
- Minimal stats endpoint for delivery reports in scout HOT 3
- Clarify "Average coverage"
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