Comments (2)
goodb
commented on June 23, 2024
Noting here that I have currently adopted the pattern applied by PRO for capturing modifications in the reactome entity ontology (reo). PRO and REO consider modified forms of proteins subclasses of the canonical protein, distinguished by the addition of subclass_of (has_part modification class) axioms. Modification classes come from the protein modification ontology http://purl.obolibrary.org/obo/mod.owl .
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goodb
commented on June 23, 2024
Conversion to use of reactome entities closes this issue (in the context of the go-cams). May re-emerge during specific export processes but those will be new issues.
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