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License: GNU General Public License v3.0
Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data
License: GNU General Public License v3.0
I tried to run Mycorrhiza examples with Ubuntu 18.04.4 using the python script, but the following error occurs:
Outputting data in Nexus format.: 100%|████████| 90/90 [00:00<00:00, 939.25it/s]
Building network from file data/JN3L2X7MA3CPN57GYCSHLV21EUVZNONP.nex
SplitsTree -g -v -i /home/rhaphael/Desktop/Mycorrhiza/mycorrhiza-master/examples/data/JN3L2X7MA3CPN57GYCSHLV21EUVZNONP.nex
multiprocess.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/rhaphael/.local/lib/python3.6/site-packages/multiprocess/pool.py", line 119, in worker
result = (True, func(*args, **kwds))
File "/home/rhaphael/.local/lib/python3.6/site-packages/multiprocess/pool.py", line 44, in mapstar
return list(map(*args))
File "/home/rhaphael/.local/lib/python3.6/site-packages/mycorrhiza/analysis/analysis.py", line 141, in func
return sn.execute_nexus_file(file)
File "/home/rhaphael/.local/lib/python3.6/site-packages/mycorrhiza/network/network.py", line 25, in execute_nexus_file
bash_nexus_file(filename)
File "/home/rhaphael/.local/lib/python3.6/site-packages/mycorrhiza/network/network.py", line 40, in bash_nexus_file
process = subprocess.Popen(bash_command.split(), stdout=subprocess.PIPE, shell=True if os_name == 'Windows' else False)
File "/usr/lib/python3.6/subprocess.py", line 729, in init
restore_signals, start_new_session)
File "/usr/lib/python3.6/subprocess.py", line 1364, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'SplitsTree': 'SplitsTree'
"""
How do I solve this problem (error)?
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