Comments (1)
Hi @sulheim
Thank you for pointing out the issue of duplicate reactions and metabolites. As the gapseq database is derived from the ModelSEED biochemistry database, we also have some of the duplicates that were already part of ModelSEED. When we have noticed specific cases of duplicates, we also try to resolve them on a case-by-case basis. When resolving duplicates, we have to be careful not to lose specific links such as EC numbers or cross-references to other databases.
The metabolite ID "cpd11416" is the compound ID for the biomass, so adding a formula to it is tricky.
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