Comments (4)
Waschina
commented on June 21, 2024
Hi @Jagadrupa00
I am a little confused because gapseq does not have a file called medium.sh. Is this a script that you manually created?
Also, could you perhaps send the output of gapseq test ?
Best
Silvio
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oohas2000
commented on June 21, 2024
Yes, sorry, it was a personal file.
…On Tue, Jul 25, 2023, 4:20 PM Silvio Waschina ***@***.***> wrote:
Hi @Jagadrupa00 <https://github.com/Jagadrupa00>
I am a little confused because gapseq does not have a file called
medium.sh. Is this a script that you manually created?
Also, could you perhaps send the output of gapseq test ?
Best
Silvio
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oohas2000
commented on June 21, 2024
Another question I had regarding the medium it is generating: is the medium generated by gapseq minimal? And can it be used in wet-lab experiments?
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Waschina
commented on June 21, 2024
It is not necessarily a minimal media, but at least a chemically defined one. The medium prediction can provide some ideas about which nutrients might support growth. Still, we recommend checking available literature on experimental growth media for the strain or related microorganisms before running wet-lab experiments.
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