Related Issues (20)
- Replace slopes_dt with aucs_dt in outlier removal [run_eggla_lmm()]
- Inconsistent use of vep and vep_file in run_eggla_gwas() HOT 1
- Title of residual plots in run_eggla_lmm()
- New version of run_eggla_gwas not working HOT 16
- Increase of number of iterations for the EM algorithm `niterEM` HOT 5
- Currently in `egg_model` (and related), warnings are not necessarily captured
- Covariates and slopes HOT 6
- GWAS function output file to tab separated HOT 9
- `growthcleanr` has been archived from CRAN HOT 2
- Update knots from 2,8,12 to 1,8,12
- Check that all diagnostics figures/tables to the output of `run_eggla_lmm()` HOT 2
- Outlier plot legend getting mixed HOT 2
- Error in run_eggla_gwas when use_info=TRUE HOT 8
- All parameters correlations
- INFO_TYPE description given to genotyped SNPs HOT 5
- Incorrect parameter correlations HOT 4
- Release `eggla` `v1.0.0` HOT 5
- HWE_P in run_eggla_gwas() results inconsistent with analysis plan HOT 6
- N and EAF definition HOT 10
- Update default value for compute_apar function HOT 1
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