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Home Page: https://ngless.embl.de
Profiler for metagenomics based on NGLess
Home Page: https://ngless.embl.de
In
ng-meta-profiler/marine-profiler.ngl
Line 4 in 4b7b49a
om-rgc 0.9
but we only have om-rgc 0.0
.a)
create the 0.9 module or instead b)
downgrade the ngless script to 0.0
.
Since we also have the ng-meta-profiler
scripts on Zenodo, if we go for b)
we will need to update those as well.
The recommendation should be to use the state-of-the-art.
Hi,
I am running the pipeline in an slurm enviroment and even though I specified the -t
to write into scratch, the pipeline start to write on ~/.local/share/ngless
(specifically /users/valensan/.local/share/ngless/data.tar.gz2776146-0.tmp). Which at some point runs out of disk space.
error log:
Exiting after fatal error:
An unhandled error occurred (this should not happen)!
If you can reproduce this issue, please run your script
with the --trace flag and report a bug (including the script and the trace) at
https://github.com/ngless-toolkit/ngless/issues
The error message was: `/users/valensan/.local/share/ngless/data/Modules/igc.ngm/0.9/igc.fna: hPutBuf: permission denied (Quota exceeded)`
I tried also by exporting another temporary path but didn't work.
what could I do?
thanks in advance!
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