Topic: brain-imaging Goto Github

👇 Here are 135 public repositories matching this topic...

adamkwolf / 3d-nii-visualizer
brain-imaging,A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5
User: adamkwolf
vtk qt5 brain-imaging mri-applications mri-images 3d-visualization

ai-med / quicknat_pytorch
brain-imaging,PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
Organization: ai-med
deep-learning brain-imaging mri-images segmentation biomarkers machine-learning convolutional-neural-networks computer-vision medical-imaging ai

alexandershaw4 / sourcemesh
brain-imaging,A multipurpose matlab-based MEG/EEG overlay & network plotter
User: alexandershaw4
neuroscience neuroimaging graph-theory visualization visualize-data brain-imaging meg eeg surface neurophysiology

aramis-lab / clinicadl
brain-imaging,Framework for the reproducible processing of neuroimaging data with deep learning methods
Organization: aramis-lab
Home Page: https://clinicadl.readthedocs.io/
python alzheimer-disease deep-learning pytorch neuroimaging convolutional-neural-network medical-imaging brain-imaging

arttumiettinen / pi2
brain-imaging,C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
User: arttumiettinen
image-analysis python 3d-images tomography image-processing brain-imaging c-plus-plus cluster-computing computing-cluster high-performance-computing

braindynamicsusyd / nftsim
brain-imaging,C++ library for simulation of multiscale neural field dynamics
Organization: braindynamicsusyd
theory simulation neuroscience brain-imaging eeg-signals

bunpc / pysnirf2
brain-imaging,Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) files
Organization: bunpc
fnirs nirs brain-imaging openfnirs near-infrared-spectroscopy snirf

colelab / coleanticevicnetpartition
brain-imaging,Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)
Organization: colelab
neuroscience brain connectivity brain-imaging neuroimaging network-partitions

cwatson / braingraph
brain-imaging,Graph theory analysis of brain MRI data
User: cwatson
graph-theory network-analysis neuroscience neuroimaging mri r statistics brain-connectivity connectome complex-networks

dhanya-abhirami / brain-tumour-segmentation
brain-imaging,Use of Image Processing to detect brain tumour in MRI Scan
User: dhanya-abhirami
brain-imaging brain-tumor-segmentation mri-images image-processing watershed-algorithm thresholding sobel-gradient

donders-institute / bidscoin
brain-imaging,BIDScoin converts your source-level neuroimaging data to BIDS
Organization: donders-institute
Home Page: https://bidscoin.readthedocs.io
bids mri neuroimaging dicom pet imaging data-sharing multi-echo multi-echo-combine brain-imaging

eit-team / scousetom
brain-imaging,Open Source EIT system using Keithley 6221 current source and EEG systems
Organization: eit-team
eeg hardware eit tomography arduino brain-imaging biomedical-instrumentation electrical-impedance-tomography scousetom

eit-team / stroke_eit_dataset
brain-imaging,Processing and directory structure for Stroke EIT Dataset
Organization: eit-team
electrical-impedance-tomography stroke brain-imaging biomedical-engineering eit dataset

elliohow / fmri_roi_analysis_tool
brain-imaging,An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
User: elliohow
fmri fmri-preprocessing python neuroimaging brain-imaging fmri-roi-analysis

emergelab / hierarchical-brain-networks
brain-imaging,Determining the Hierarchical Architecture of the Human Brain Using Subject-Level Clustering of Functional Networks
Organization: emergelab
network-neuroscience community-detection brain-imaging magnetic-resonance-imaging

iamsuyogjadhav / brainy
brain-imaging,Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.
User: iamsuyogjadhav
Home Page: https://suyogjadhav.com/portfolio/Brainy/
mri brain-imaging brain-tumor-segmentation keras-tensorflow flask paniit brain-tumour segmentation skillenza medical-imaging

ibt-fmi / mouse-brain-templates
brain-imaging,Generate a package-manager-friendly mouse brain atlases collection.
Organization: ibt-fmi
neuroscience brain-imaging mri packaging gentoo portage package-management linux mouse-brain-mri 3d-printing

jcreinhold / synthtorch
brain-imaging,deep neural network-based image translation/synthesis
User: jcreinhold
brain-imaging deep-learning image-synthesis image-translation mri pytorch

jfortin1 / ravel
brain-imaging,Intensity normalization of structural MRIs using RAVEL
User: jfortin1
brain-imaging image-normalization image-preprocessing image-processing mri normalization ravel smri structural-mri

jondeaton / brats18-project
brain-imaging,Brain tumor segmentation using fully-convolutional deep neural networks.
User: jondeaton
Home Page: https://www.med.upenn.edu/sbia/brats2018/data.html
brain-imaging brain-tumor-segmentation deep-convolutional-networks deep-learning segmentation

laowangbobo / residual_mlp_cnn_mixer
brain-imaging,(MICCAI 2022) PyTorch implementation of Denoising of 3D MR images using a voxel-wise hybrid residual MLP-CNN model to improve small lesion diagnostic confidence.
User: laowangbobo
brain-imaging computer-vision deep-learning denoising-images diagnosis image-reconstruction lesions medical-imaging mri pytorch

me-ica / tedana
brain-imaging,TE-dependent analysis of multi-echo fMRI
Organization: me-ica
Home Page: https://tedana.readthedocs.io
brain-imaging fmri neuroimaging python

mentalab-hub / explorepy
brain-imaging,Python API for Mentalab biosignal aquisition devices
Organization: mentalab-hub
Home Page: https://mentalab.com/
biosignals eeg eeg-signals bci brain-computer-interface emg ecg ecg-signal neuroscience brain-machine-interface

mikeroyal / neuromorphic-computing-guide
brain-imaging,Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
User: mikeroyal
neuromorphic-computing neuromorphic-hardware neuromorphic-engineering neuromorphic neural-networks neural-engine neural-engineering neural-network neuronal-network neural-machine-translation

natlee / nipype-preprocess-on-brain-mr
brain-imaging,The project is used to do preprocessing on brain MR images by using Nipype.
User: natlee
brain mri mr medical-image-processing skull-stripping fsl ants registration enhancement segmentation bias-field-correction pipeline brain-mri brain-imaging brain-segmentation acpc dockerfile nipype python

netneurolab / netneurotools
brain-imaging,Useful tools from the Network Neuroscience Lab
Organization: netneurolab
Home Page: https://netneurolab.github.io/netneurotools
brain-imaging brain-networks hacktoberfest neuroimaging python

netneurolab / neuromaps
brain-imaging,A toolbox for comparing brain maps
Organization: netneurolab
Home Page: https://netneurolab.github.io/neuromaps
brain-imaging hacktoberfest neuroimaging python

neuroscout / neuroscout
brain-imaging,NeuroScout web app and API
Organization: neuroscout
Home Page: https://neuroscout.org
brain-imaging fmri open-source naturalistic statmaps

neurovault / neurovault
brain-imaging,Easy to use web database for statistical maps.
Organization: neurovault
Home Page: https://www.neurovault.org
brain-imaging statmaps fmri cognitive-concepts open-source django

nilearn / nilearn
brain-imaging,Machine learning for NeuroImaging in Python
Organization: nilearn
Home Page: http://nilearn.github.io
python machine-learning fmri neuroimaging mvpa decoding brain-connectivity brain-imaging brain-mri

nipreps / fmriprep
brain-imaging,fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Organization: nipreps
Home Page: https://fmriprep.org
bids brain-imaging fmri fmri-preprocessing image-processing neuroimaging

nipy / mindboggle
brain-imaging,Automated anatomical brain label/shape analysis software (+ website)
Organization: nipy
Home Page: http://mindboggle.info
brain-imaging image-analysis image-processing mesh-processing python python3 shape-analysis shape-descriptor surfaces

nipy / nibabel
brain-imaging,Python package to access a cacophony of neuro-imaging file formats
Organization: nipy
Home Page: http://nipy.org/nibabel/
afni-brik-head brain-imaging cifti-2 data-formats dicom ecat gifti minc neuroimaging nifti python streamlines tck trk

nipy / nipype
brain-imaging,Workflows and interfaces for neuroimaging packages
Organization: nipy
Home Page: https://nipype.readthedocs.org/en/latest/
big-data brain-imaging brainweb data-science dataflow dataflow-programming neuroimaging python workflow-engine

nsblab / braineigenmodes
brain-imaging,Code supporting 'Geometric constraints on human brain function'
Organization: nsblab
modeling neuroscience brain-function brain-imaging computational-neuroscience eigenmodes fmri

parietal-inria / difumo
brain-imaging,Dictionary of Functional Modes for brain imaging
Organization: parietal-inria
Home Page: https://parietal-inria.github.io/DiFuMo
brain-imaging atlases brain-atlas

plotly / dash-brain-surface-viewer
brain-imaging,Dash app for viewing brain surfaces saved as MNI files. Data from https://github.com/aces/brainbrowser
Organization: plotly
brain-imaging dash mcgill data-science

polarbean / deepslice
brain-imaging,A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
User: polarbean
Home Page: https://www.deepslice.com.au
machine-learning deep-learning histology histological-images brain-imaging automation python brainmap brainmaps neuroscience

razvanmarinescu / brain-coloring
brain-imaging,BrainPainter - Brain Visualisation Software
User: razvanmarinescu
neuroimaging visualisation brain brain-imaging pathology-image

salmansust / ai-for-medicine-specialization
brain-imaging,I have completed this specialization from Coursera by deeplearning.ai. I have uploaded the solutions of the assignments in this repo.
User: salmansust
coursera coursera-specialization coursera-machine-learning coursera-assignment deeplearning-ai artificialintelligence deeplearning healthcare-imaging mri-segmentation brain-imaging

sampsapursiainen / zeffiro_interface
brain-imaging,Interface for using finite elements in inverse problems with complex domains
User: sampsapursiainen
inversion eeg meg finite-elements bayesian-inference brain-imaging

sarslancs / graph_saliency_maps
brain-imaging,Graph saliency maps through spectral convolutional networks for brain mapping
User: sarslancs
deep-learning brain-imaging neuroscience resting-state-fmri ukbiobank

sergivalverde / sub-cortical_segmentation
brain-imaging,Sub-cortical brain tissue segmentation using CNN
User: sergivalverde
cnn segmentation image-analysis medical-imaging brain-imaging subcortical

tanyelai / neuroscience
brain-imaging,Naive journal of computer engineering student who is trying to know more about brain science.
User: tanyelai
neuroscience brain-imaging magnetic-resonance-imaging

templateflow / templateflow
brain-imaging,The TemplateFlow Archive - A DataLad super-dataset
Organization: templateflow
neuroimaging brain-imaging mri-brain

tractor / tractor
brain-imaging,Magnetic resonance imaging and tractography with R
Organization: tractor
tractography brain-imaging parcellation r graph-algorithms

ubamba98 / brain-segmentation
brain-imaging,Brain Segmentation on MRBrains18
User: ubamba98
brain unet-image-segmentation keras mri-segmentation segmentation brain-imaging

vaibhavshukla182 / brain-mri-segmentation
brain-imaging, Smart India Hackathon 2019 project given by the Department of Atomic Energy
User: vaibhavshukla182
biomedical-image-processing brain-imaging brain-mri brain-tumor brain-tumor-segmentation deep-learning image-segmentation keras-tensorflow machine-learning medical-imaging mri mri-images segmentation tensorflow unet

volbrain / assemblynet
brain-imaging,AssemblyNet: 3D Whole Brain MRI segmentation pipeline
User: volbrain
neuroscience neuroimaging brain-imaging medical-imaging deep-learning neuroanatomy brain-segmentation mri mri-segmentation nifti

zhengyang-wang / unet_3d
brain-imaging,3D Unet Equipped with Advanced Deep Learning Methods
User: zhengyang-wang
segmentation deep-learning deep-neural-networks brain-imaging 3d-models unet