Topic: histology Goto Github
Some thing interesting about histology
Some thing interesting about histology
histology,Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images: a combined analysis of the PORTEC randomised trials and clinical cohorts'.
Organization: airmec
Home Page: https://doi.org/10.1016/S2589-7500(22)00210-2
histology,Axon/Myelin segmentation using Deep Learning
Organization: axondeepseg
Home Page: https://axondeepseg.rtfd.io/
histology,A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
User: biologytools
Home Page: https://discord.com/channels/1075990609707417600/1075990610160394302
histology,Histology Image Viewer and Converter
User: biomechdevops
histology,MMIR: Multimodal Image Registration
Organization: bmdsoftware
histology,Dataset: landmarks for registration of histology images
User: borda
Home Page: http://borda.github.com/dataset-histology-landmarks
histology,An application for exporting and analysing tissue array whole slide image files
User: c-arthurs
Home Page: https://quarray.readthedocs.io
histology,SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Organization: ciccalab
Home Page: https://github.com/ciccalab/SIMPLI/wiki
histology,A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.
Organization: circulatoryhealth
histology,The official deployment of the Digital Slide Archive and HistomicsTK.
Organization: digitalslidearchive
Home Page: https://digitalslidearchive.github.io
histology,A Python toolkit for pathology image analysis algorithms.
Organization: digitalslidearchive
Home Page: https://digitalslidearchive.github.io/HistomicsTK/
histology,A Girder plugin for pathology image annotations and analysis.
Organization: digitalslidearchive
histology,a toolbox for manipulation of digital pathology slides and annotations
User: dslituiev
histology,2D - 3D slice-to-volume registration pipeline
User: fouga
histology,This repository contains the codes for reproducing the results obtained by out DeepHistoPathology model for Ivasive Ductal Carcinoma open Dataset cancer detection
User: fperdigon
histology,Sitio web de la Cátedra de Histología y Anatomía de la FIUNER
Organization: hya-fiuner
Home Page: https://hya-fiuner.github.io/
histology,Generate a package-manager-friendly archive of ABI gene expression maps registered in SAMRI standard space.
Organization: ibt-fmi
histology,DAN-NucNet: A dual attention based framework for nuclei segmentation in cancer histology images under wild clinical conditions
User: ibtihajahmadkhan
Home Page: https://doi.org/10.1016/j.eswa.2022.118945
histology,Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
Organization: imaginglab
Home Page: https://iciar2018-challenge.grand-challenge.org
histology,Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
User: jamesdolezal
histology,Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
User: jamesdolezal
Home Page: https://slideflow.dev
histology,A virtual slide viewer (virtual microscope) for extremely high-resolution histopathology images. Made with Python, Flask and Leaflet.
User: jurgenizer
histology,Deep-learning based classification pipeline for subtyping lung tumors from histology. Study design and codebase to analyze the impact of nucleus segmentation on subtyping.
User: karthik-d
histology,MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images. Demo version deployed at: https://lbgi.fr/MyoQuant
User: lambda-science
Home Page: https://lbgi.fr/MyoQuant/
histology,MyoQuant-Streamlit is a demo web application to showcase usage of MyoQuant. Demo version deployed at: https://lbgi.fr/MyoQuant
User: lambda-science
Home Page: https://lbgi.fr/MyoQuant
histology,Approach that won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.
User: lely475
Home Page: https://arxiv.org/abs/2312.12151
histology,Unofficial PyTorch implementation of the HistoSeg model for Segmentation of histopathological images
User: lorenzrutkevich
histology,My project for the national ai competition in Germany 2023
User: lorenzrutkevich
histology,Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Organization: mahmoodlab
Home Page: http://crane.mahmoodlab.org
histology,HEST: Bringing Spatial Transcriptomics and Histopathology together
Organization: mahmoodlab
histology,Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Organization: mahmoodlab
histology,Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Organization: mahmoodlab
Home Page: http://pancancer.mahmoodlab.org
histology,Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Organization: mahmoodlab
histology,AI-based pathology predicts origins for cancers of unknown primary - Nature
Organization: mahmoodlab
Home Page: http://toad.mahmoodlab.org
histology,A pipeline to segment tissue from the background in histological images
User: manuel-munoz-aguirre
histology,Final year project. Analysis and diagnosis of histology images of tumours.
User: marleysudbury
Home Page: https://marleysudbury.github.io/final-year-project
histology,Partial-Aligner is a napari plugin used for manual registration and histology slide repair
User: mbphys
histology,Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Organization: mica-mni
Home Page: http://mica-mni.github.io
histology,Software used by the AGH team during the ANHIR challenge.
User: mwod
histology,Code used to create the DeepHistReg submission to the ANHIR challenge.
User: mwod
histology,The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.
User: nauyan
histology,Analyse gigapixel images, annotated with millions of geometries, using a modern, highly-performant web interface. Built using Rust.
User: nmzein
histology,3D printed brain matrix
User: openbehavior
histology,A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
User: polarbean
Home Page: https://www.deepslice.com.au
histology,QuPath - Bioimage analysis & digital pathology
Organization: qupath
Home Page: https://qupath.github.io
histology,This repo for the paper titled "SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification"
Organization: sotiraslab
Home Page: https://arxiv.org/abs/2311.00048
histology,Segmentation of histological images and fibrosis identification with a convolutional neural network
User: xhelenfu
histology,Graph + Image Bimodal Deep Learning for Histology Image Classification
User: yiqings
histology,RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]
User: yiqings
histology,Tricks based on stain variations for histology analysis
User: yiqings
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