Topic: tractography Goto Github
Some thing interesting about tractography
Some thing interesting about tractography
tractography,Magnetic Resonance Imaging data processing pipelines with a strong emphasis on the diffusion weighted MRI (DWI) modality and tractogram estimation
User: alexpron
tractography,Blender plugin for rendering brain tractography (.tck) files!
User: apsis
tractography,Nipype and tractography!
User: axiezai
Home Page: https://axiezai.github.io/pipetography/
tractography,A toolkit for developing reinforcement algorithm for diffusion weighted image analysis.
User: banctilrobitaille
tractography,Bend, twist, spread... TrackerYoga is a set of synthetic diffusion MRI data for testing tractography algorithms.
User: baranaydogan
tractography,Method for encoding brain connectomes in multidimensional arrays (tensors).
Organization: brain-life
Home Page: https://github.com/brain-life/encode
tractography,OG 2019 - Project 04: Novel neuronavigation to guide brain stimulation
Organization: brainhack-ch
tractography,Runs mrtrix3 ACT (Anatomically Constrained Tractography) using either single- or multi-shell diffusion-weighted MRI data.
Organization: brainlife
Home Page: https://doi.org/10.25663/bl.app.101
tractography,Run the recommended preprocessing procedure provided by mrtrix3. The options available mostly reflect the optimal DESIGNER pipeline that was recently proposed. This App runs for >15 on topup if both PA and AP dwi files are provided. It detects bvecs flipping (dwigradcheck) and update the gradient table accordingly.
Organization: brainlife
tractography,Introduction to dMRI
Organization: carpentries-incubator
Home Page: https://carpentries-incubator.github.io/SDC-BIDS-dMRI/
tractography,Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
User: christiennedamatac
Home Page: https://www.biologicalpsychiatrycnni.org/article/S2451-9022(20)30205-6/fulltext
tractography,Python tool for spatially normalizing diffusion MRI data
User: clintg6
tractography,Graph theory analysis of brain MRI data
User: cwatson
tractography,Scripts for MRI preprocessing
User: cwatson
tractography,A collection of jupyter notebooks designed to provide a comprehensive exploration of concepts related to white matter segmentation.
User: dannbullock
tractography,This repository contains the code of UtiliziNg tRActography to uncoVEr muLti-fixel microstructure (UNRAVEL).
User: delintenicolas
Home Page: https://unravel.readthedocs.io/
tractography,Package facilitating the tracking of sub-cortical U-Fibers
User: delintenicolas
tractography,DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Organization: dipy
Home Page: https://dipy.org
tractography,Code for randomised tractogram filtering using rSIFT
User: djoerch
tractography,A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
User: dpys
Home Page: https://pynets.readthedocs.io/en/latest/
tractography,Along Tract Analysis of Diffusion Weighted Images
User: esinkarahan
tractography,These scripts are used to generate brain surface and tract files (in .obj format, parcellated and registered) from Freesurfer recon-all and trac-all packages.
User: fangcai-fifi
tractography,A fast and valid tool for extracting diffusion-based brain connectivity
User: jasonbian97
Home Page: https://jasonbian97.github.io/fastcod/
tractography,A fast python tool for extracting diffusion-based brain connectivity
User: jasonbian97
Home Page: https://jasonbian97.github.io/fastcod/
tractography,Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator
User: kul-radneuron
tractography,INF6200 – introduction to research course, B.Sc.A. in Computer Science and Software Engineering
Organization: linum-uqam
tractography,Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.
User: lorifranke
tractography,Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
Organization: masilab
Home Page: https://my.vanderbilt.edu/masi
tractography,TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.
User: matteomancini
Home Page: https://trampolino.readthedocs.io
tractography,Processing and visualization tools for quantitative MRI data
User: mfroeling
Home Page: https://QMRITools.com
tractography,MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
Organization: mic-dkfz
Home Page: http://mitk.org/wiki/MITK
tractography,A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Organization: muscbridge
Home Page: https://pydesigner.readthedocs.io/en/latest/
tractography,Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.
Organization: niraluser
tractography,Preprocessing of diffusion MRI
Organization: pennlinc
Home Page: http://qsiprep.readthedocs.io
tractography,We provide a method to extract the tractographic features from structural MR images for patients with brain tumor
User: pykao
tractography,This repository extracts the tractograpic feature, other first-order features and the state-of-the-art feature from the stroke lesion. A random forest regressor is used with one type of feature to predict the modified Rankin Scale of stroke patients.
User: pykao
tractography,Easy and comprehensive assessment of predictive power, with support for neuroimaging features
User: raamana
Home Page: https://raamana.github.io/neuropredict/
tractography,FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
User: ruizengalways
tractography,Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning
Organization: scil-vital
tractography,Tractography learning
Organization: scil-vital
Home Page: https://tractolearn.readthedocs.io/en/latest/
tractography,Multi-platform, free open source software for visualization and image computing.
Organization: slicer
Home Page: https://www.slicer.org
tractography,:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
Organization: slicer
Home Page: https://www.slicer.org/
tractography,ORG Fiber Clustering White Matter Atlas
Organization: slicerdmri
tractography,Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Organization: slicerdmri
Home Page: http://dmri.slicer.org
tractography,White matter tractography clustering and more...
Organization: slicerdmri
Home Page: https://dmri.slicer.org/whitematteranalysis/
tractography,Magnetic resonance imaging and tractography with R
Organization: tractor
tractography,FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository, presented at the ISBI 2024 conference
User: tylerspears
Home Page: https://arxiv.org/abs/2312.05721
tractography,Geolab : Geometric-based tractography parcellation of Superficial white matter
User: vindasna
tractography,A novel probabilistic tractography in Superficial White Matter
User: xinyu-nie
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