Topic: cellprofiler Goto Github
Some thing interesting about cellprofiler
Some thing interesting about cellprofiler
cellprofiler,Tools for Processing Results from CellPainting Assay
User: apahl
cellprofiler,Analyzing Cell Painting results with Dask and Pandas - not yet ready for use by others
User: apahl
cellprofiler,A plate image viewer for visually analysing Cell Painting results
User: apahl
cellprofiler,analyzing CellProfiler output
User: ati-74
cellprofiler,Some CellProfiler plugins.
Organization: biomicrodev
cellprofiler,A pixel classification based multiplexed image segmentation pipeline
Organization: bodenmillergroup
Home Page: https://bodenmillergroup.github.io/ImcSegmentationPipeline/
cellprofiler,High-dimensional phenotyping to define the genetic basis of cellular morphology
Organization: broadinstitute
cellprofiler,Running cellprofiler on eddie3 / SGE clusters
Organization: carragherlab
cellprofiler,Documentation and scripts to install CellProfiler on eddie3
Organization: carragherlab
cellprofiler,Collect distributed cellprofiler results into sqlite databases.
Organization: carragherlab
cellprofiler,Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Organization: cellprofiler
Home Page: http://cellprofileranalyst.org
cellprofiler,Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.
Organization: circulatoryhealth
Home Page: https://www.vanderlaanscience.nl/posts/a-story-about-expressscan
cellprofiler,OrganelleProfiler and OrganelleContentProfiler pipelines for CellProfiler as described in Laan et al (PLoS ONE, 2023)
User: clotterdam
Home Page: https://pubmed.ncbi.nlm.nih.gov/37315066/
cellprofiler,A curated list of awesome cytodata resources
Organization: cytodata
cellprofiler,Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
Organization: cytomining
Home Page: https://cytomining.github.io/CytoTable/
cellprofiler,Image-based Profiling Handbook
Organization: cytomining
Home Page: https://cytomining.github.io/profiling-handbook/
cellprofiler,Python package for processing image-based profiling data
Organization: cytomining
Home Page: https://pycytominer.readthedocs.io
cellprofiler,A collection of python modules and command line tools for processing image-based RNAi screens.
User: dirmeier
cellprofiler,Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
Organization: distributedscience
Home Page: https://distributedscience.github.io/Distributed-CellProfiler/
cellprofiler,A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
User: hallvaaw
cellprofiler,Automated image analysis of colony formation assay experiments, using Cell profiler and R markdown
User: jessievb
cellprofiler,Tutorial for single cell analysis of nuclear translocation measured by timelapse imaging
User: joachimgoedhart
cellprofiler,Singularity-based linux container with CellProfiler 4 pre-installed into it.
User: pranjaldhole
cellprofiler, ImageJ macros for preparation of single images from stacks with maximum intensity projections and partially automated selection of slices in focus. CellProfiler Pipeline for yH2AX and 53BP1 counting and mitotic cells segmentation in asynchronous cultures. R scripts for processing of CellProfiler output.
User: radee2k
cellprofiler,“Novel Marker Distribution Pipeline for Analysis of Cell Based Quantitative Spatial Information”. The aim of this research was to analyse quantitative spatial information and provide intuitive visualisation relating to the identification of cells relative to tissue structure and pathology such as cancer tumour.
User: richardbekoe
cellprofiler,Install script for CellProfiler v3.1.9 on Ubuntu 18.04.3 LTS(+) - bash, installs python3.6, unet and classify
User: scotchman0
cellprofiler,slideNormalize: normalisation of histological high-resolution images.
User: swvanderlaan
cellprofiler,Automatic quantification nuclear staining with CellProfiler
User: toledoem
cellprofiler,Website of Turku Bioimaging - Image Data Team (TBI-IDAT) containing our current and past projects as well as software and tools we use.
Organization: turku-bioimaging
cellprofiler,
User: vatsal-jari
cellprofiler,Image-based analysis of cardiac fibroblast datasets to uncover proprietary drug impact on reversing fibrosis
Organization: wayscience
cellprofiler,Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)
Organization: wayscience
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