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etmorefish avatar etmorefish commented on July 19, 2024

the files pred1.txt , pred2.txt , v1.sort.bam , vi2.sort.bam are in the same fold ?

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zhpn1024 avatar zhpn1024 commented on July 19, 2024

1 TISs in pred1.txt.
1 TISs in pred2.txt.
1 TISs in total.

Why there is only one TIS?

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zhpn1024 avatar zhpn1024 commented on July 19, 2024

The error is because the number of TISs are too small, and result in fail of normalization.

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etmorefish avatar etmorefish commented on July 19, 2024

image
hi,using this tool how to get the picture ?

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etmorefish avatar etmorefish commented on July 19, 2024

the number of TISs is more than 100.How many at least ?

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zhpn1024 avatar zhpn1024 commented on July 19, 2024

The log showed only one TIS selected. Do you use the full transcript annotation?
The figure is generated in another script. I'll update later.

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shwdmsh avatar shwdmsh commented on July 19, 2024

Why there is only one TIS? @zhpn1024 The genome is virus. There is some error?

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zhpn1024 avatar zhpn1024 commented on July 19, 2024

There are filters to select significant TISs (--ipth --iqth).

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zhpn1024 avatar zhpn1024 commented on July 19, 2024

It is difficult to open github these days.

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shwdmsh avatar shwdmsh commented on July 19, 2024

@zhpn1024 thanks .I will try these parameters.

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