Allen Institute for Neural Dynamics's Projects
device that accepts Harp timestamps and emits a coded timestamp for ephys data alignment.
a tiff-to-octree converter for dask
inverted spim system control
Java library for reading OME-Zarr data sets.
a migration of the lick detector hardware from Janelia
Software examples for Thorlabs products: Spectrometers CCSxxx | Polarimeter PAX1000 | Power Meter PMxxx | Optical Spectrum Analyzers OSA | Shack-Hartmann Wavefront Sensors WFSxx | CMOS Camera Beam Profiler BC207
testing compression for lightsheet data
Mesoscale activity ephys ingest schema
BOM generator for the Modular Insertion System (MIS)
pass-through connection panels for the Modular Insertion System (MIS)
usb serial to 6x camera focus ring utility
python library for the mis-focus-controller
Probe Storage Box for the Modular Insertion System (MIS)
WebGL-based viewer for volumetric data
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
A registry of publicly available datasets on AWS
Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean
Python interface to Optotune focus-tunable lenses
GUI control software for the Modular Insertion System (MIS)
Running compute-intense parts of BigStitcher distributed
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
Description of the Harp protocol.
Python implementation of the Harp protocol.
An image processing package for removing streaks from SPIM images
Python library for controlling the micromanipulator systems from New Scale Technologies