allenneuraldynamics Goto Github PK

incf-tutorial-cellranger

incf-tutorial-scanpy

instrument-widgets

Widget that will create inputs for properties in a class

isi_segmentation

ispim-control

inverted spim system control

jomezarr

Java library for reading OME-Zarr data sets.

lamf-analysis

Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

lamf_ophys_analysis_dev

Dev site for testing analysis pipelines and qc for learning mFISH project. Anything related to 2p data (plus behavior and spatial transcriptomics)

lick-detector-electro

a migration of the lick detector hardware from Janelia

lightning_pose_co_capsule

lightsheet-compression-tests

testing compression for lightsheet data

light_analysis_examples

Software examples for Thorlabs products: Spectrometers CCSxxx | Polarimeter PAX1000 | Power Meter PMxxx | Optical Spectrum Analyzers OSA | Shack-Hartmann Wavefront Sensors WFSxx | CMOS Camera Beam Profiler BC207

map-ephys

Mesoscale activity ephys ingest schema

mis-bom

BOM generator for the Modular Insertion System (MIS)

mis-connect

pass-through connection panels for the Modular Insertion System (MIS)

mis-focus-controller

usb serial to 6x camera focus ring utility

mis-focus-controller-sw

python library for the mis-focus-controller

mis-probe-box

Probe Storage Box for the Modular Insertion System (MIS)

modular-insertion-system

A flexible, scalable extracellular electrophysiology rig

ndx-aind-metadata

NWB extension to add AIND metadata

neuroglancer

WebGL-based viewer for volumetric data

neuron-tracing-utils

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

nmcp-deploy

nwb_packaging_subject_capsule

nwb_packaging_units

Code Ocean capsule to export ephys units data to NWB

ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

open-data-registry

A registry of publicly available datasets on AWS

opto

Python interface to Optotune focus-tunable lenses

oxxius_laser

A minimal python driver for communicating with a Oxxius Laser.