Allen Institute for Neural Dynamics's Projects
GUI control software for the Modular Insertion System (MIS)
Numcodecs implementation of photon conversion using poisson statistics
Running compute-intense parts of BigStitcher distributed
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
Description of the Harp protocol.
Python implementation of the Harp protocol.
An image processing package for removing streaks from SPIM images
Python library for controlling the micromanipulator systems from New Scale Technologies
a nonblocking implementation for reading the ADS7049 on the RP2040
N5 library implementation using Amazon Web Services S3 backend.
Repository for SciComp 2023 Summer Intern Project.
Evaluates neuron segmentations in terms of statistics related to the number of splits and merges
common features shared across Allen Institute SPIM systems
Supervoxel-based topological loss function for training neural networks to perform instance segmentation.
A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
Code Ocean capsule for sharing analysis of thalamus MERFISH data
a lightweight python interface for ASI brand Tiger Controllers
Model/View for exa-spim
About a minimal python package for controlling vortran stradus lasers
core code for spim acquisition
Numcodecs implementation of the WavPack audio codec
Numcodecs wrapper to the WavPack audio codec
Janelia Workstation
scalable multiscale image pyramids in python