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Allen Institute for Neural Dynamics's Projects

parallax icon parallax

GUI control software for the Modular Insertion System (MIS)

pyharp icon pyharp

Python implementation of the Harp protocol.

pystripe icon pystripe

An image processing package for removing streaks from SPIM images

python-newscale icon python-newscale

Python library for controlling the micromanipulator systems from New Scale Technologies

spim-core icon spim-core

common features shared across Allen Institute SPIM systems

supervoxel-loss icon supervoxel-loss

Supervoxel-based topological loss function for training neural networks to perform instance segmentation.

terastitcher icon terastitcher

A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

tigerasi icon tigerasi

a lightweight python interface for ASI brand Tiger Controllers

view icon view

Model/View for exa-spim

vortran_laser icon vortran_laser

About a minimal python package for controlling vortran stradus lasers

voxel icon voxel

core code for spim acquisition

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