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Maven GUI: Metabolomics Analysis and Visualization Engine

Home Page: https://github.com/eugenemel/maven/releases

License: GNU General Public License v3.0

C++ 97.80% QMake 1.20% Shell 0.58% C 0.42%

metabolomics mass-spectrometry bionformatics lipidomics isotope-labeling-experiments

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lparsons metabolomicshk aspirincode linecode jun-lizst jopark baopan0130 kenmawu ddlidded

maven's Issues

Disparity in Number of compounds loaded from msp file

When loading the file 20190509-Calico-Lipids-neg.msp,
see the following in debug console:

saveCompoundsSQL() 412131
loadCompoundSQL :  "20190509-Calico-Lipids-neg" 397072

grep reveals that there are indeed 412131 distinct compounds. Need to investigate and see what the 397072 number refers to.

8-0-26 crashes when uploading libraries

Maven version 8-0-26 crashes to desktop repeatedly (3 tries) when I try to load library files. Using the same data and libraries on 8-0-12 does not cause a crash.
I also tested 8-0-21 and this version crashes on peak detection as 8-0-18 did before.

Fix import of compounds from KNOWNS.csv file.

Broken in 8.0.23, Identified by @eugenemel in 8.1.9

Database search fails to find any hits 8.0.21

@PMSeitzer It looks like library search is not pickup any hits. here is trace

peakdetectiondialog::runBackgroundJob(QString funcName) Completed.
BackgroundPeakUpdate:processCompounds(vector<Compound*> set, string setName)
The PeakGroupCompoundMatchingPolicy is set to ALL_MATCHES
BackgroundPeakUpdate::processCompoundSlices(vector<mzSlice*>&slices, string setName)
Processing slices: setName= compounds  slices= 161
processCompoundSlices() Slices= 161
processCompoundSlices() EICs= 1610
processCompoundSlices() Groups= 0
processCompoundSlices() Peaks= 0
Compound <--> Peak Group Matches= 0
BackgroundPeakUpdate:processCompoundSlices() done.  1518  sec.

Maven Crash with malloc_error_break

Had several Maven crashes in the last couple weeks with this same error code when using different parts of Maven software, and with both MZkit and non-MZKit data. Data is all local.

Here's the most recent message (searching through Compounds Tab):

getEIC(mzrange,rtrange,mslevel): is empty: 166.085 166.088 4.14938 4.11898
getEIC(mzrange,rtrange,mslevel): is empty: 186.184 186.187 4.14938 4.11898
getEIC(mzrange,rtrange,mslevel): is empty: 166.085 166.088 4.14938 4.11898
IsotopePlot::isotopeC13Correct()  16   46  nCarbons= 9 
MassCalcWidget::setPeakGroup(PeakGroup* grp)
Maven(35185,0x1035b55c0) malloc: Incorrect checksum for freed object 0x7ffa16d136b8: probably modified after being freed.
Corrupt value: 0x0
Maven(35185,0x1035b55c0) malloc: *** set a breakpoint in malloc_error_break to debug
Abort trap: 6

This one is from last week with a slightly different error message:

EicWidget::setPeakGroup(PeakGroup* group)  0x7feb5884a6a0
 EicWidget::computeEICs()
computeEICs() pullEics().. msec= 6
Start groupCount= 24
Stop groupCount= 24
groupPeaks() msec= 6
computeEICs() Done.
 EicWidget::replot(PeakGroup* group ) group= 0x7feb5884a6a0
 EicWidget::setFocusLine(float rt)
addMS2Events()  found= 0
SpectraWidget::setScan(scan) 
MassCalcWidget::setPeakGroup(PeakGroup* grp)
Maven(22175,0x116f9e5c0) malloc: tiny_free_list_remove_ptr: Internal invariant broken (prev ptr of next): ptr=0x7feaf3bb1230, next_prev=0x7feaf3baf7c0
Maven(22175,0x116f9e5c0) malloc: *** set a breakpoint in malloc_error_break to debug
Abort trap: 6

Commit f8815ca317aeb92f81da0daadf55fd9c53ed0340 broke the build

I am no longer able to build after commit f8815ca.

...

spectrawidget.cpp: In member function 'void SpectraWidget::setCurrentScan(Scan*)':
spectrawidget.cpp:76:27: error: 'class Scan' has no member named 'log10Transform'
             _currentScan->log10Transform();
                           ^~~~~~~~~~~~~~
spectrawidget.cpp: In member function 'void SpectraWidget::drawGraph()':
spectrawidget.cpp:358:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
         if(_items[i] != NULL) delete(_items[i]); _items[i]=NULL;
         ^~
spectrawidget.cpp:358:50: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
         if(_items[i] != NULL) delete(_items[i]); _items[i]=NULL;
                                                  ^~~~~~
At global scope:
cc1plus.exe: warning: unrecognized command line option '-Wno-c++11-extensions'
make[2]: *** [Makefile.Debug:30680: tmp/spectrawidget.o] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from ../../maven-core/Eigen/Core:263:0,

...

At global scope:
cc1plus.exe: warning: unrecognized command line option '-Wno-c++11-extensions'
make[2]: *** [Makefile.Debug:30680: tmp/spectrawidget.o] Error 1
make[2]: *** Waiting for unfinished jobs....
At global scope:
cc1plus.exe: warning: unrecognized command line option '-Wno-c++11-extensions'
make[2]: Leaving directory '/home/Lance Parsons/maven_core-fork/maven'
make[1]: *** [Makefile:34: debug] Error 2
make[1]: Leaving directory '/home/Lance Parsons/maven_core-fork/maven'
make: *** [Makefile:259: sub-maven-make_first-ordered] Error 2

Fragmentation Spectra should always show from scan

Sometimes, fragmentation spectra do not have a title, and appear to represent some kind of agglomeration (instead of a scan from a sample). The fragmentation widget should always show one spectrum from a scan instead.

This may be associated with having multiple instances of the same compound in different samples in a cluster (Issue #59)

MAVEN Crashes after attempting to save

MAVEN has been crashing after attempts to save a large dataset. It produces the following error: "QSqlError("10", "Unable to fetch row", "disk I/O error")". I have provided screenshots with more information in the attached document.

MAVEN Crashes after attempting to save.pdf

Import of multiple .msp-files into Library Manager

Currently, it is not possible to import multiple .msp-files into the Maven Library Manager in one go.
Although it accepts multiple selected files when browsing and selecting them via shift/command-click, only the top selected file gets imported in the end.
We currently fragment our large libraries into smaller libraries for updates and maintenance, especially the lipid libraries grow immensely in size and variety. So we end up currently with a pool of over 30 sub-libraries (per ion-mode) of which we import specific libraries dependent on the project at hand.
Can a multiple-file import be added to the Library Manager without problems? This would help immensely with setting up Maven libraries.

Cheers,

Tobi

Isotopic peaks are not being extracted correctly

Isotopic peaks picked by Maven seem to be incorrect, both in the isotope barplot and in the extracted data when exported to .tab file. Older versions (we tested 8.0.12) seem to be working correctly, so this may be a bug introduced when the memory leak related to isotope picking was fixed.

Add customizability in SpectrumDisplayPlot to see whole reference range

Currently, the plot is auto-scaled based around the lowest and highest m/z matches.

Instead, the plot should allow some customizability around the ranges displayed. For example, want to see the entire reference spectrum, or the entire spectrum scaled by both.

Probably, the easiest, simplest thing is to determine the ranges just based on the lowest and highest frag m/z in either category. The next thing to do would be to add configurability, with a drop-down menu, with default on reference spectrum.

Add ability to bring Compare Samples dialog to front

"Compare Samples" dialog can be open (using scatter plot icon).
If the dialog is already open and the scatter plot icon is clicked again, nothing happens.

Instead, it would be nice to bring the dialog to the front.
(requested by Tobi).

Maven crashes when opening peakdetector files

I could reproduce this with all Maven versions down to 8.1.3:

Uploading the peakdetector file for X0128-0129_merged dataset works fine but saving it into a newly named peakdetector file causes Maven to crash to desktop. Opening all the mzML files directly into Maven and saving them as a separate mzrollDB file does not cause Maven to crash.

Upon crashing, Maven does save the new peakdetector file in its location but the peaklist for the peakdetector tab is cleared (except sometimes one peak) and the dbruns tab is completely gone:

It looks like Maven crashes during the saving process writing the file. This is the log from starting up Maven to picking the peakdetector file to selecting the file folder and saving it immediately afterwards (no further action done as e.g. cluster clearing, sample sorting etc.):

Last login: Tue Oct 15 17:09:45 on ttys000
macbook-pro-2:~ tobiasmaile$ /Applications/Maven8-1-9.app/Contents/MacOS/Maven ; exit;
APP= "Maven2" VER= ""
Searching for method folder:
" Checking dir: /Applications/Maven8-1-9.app/Contents/MacOS/../Resources/methods"
METHODS FOLDER= "/Applications/Maven8-1-9.app/Contents/MacOS/../Resources/methods"
WRITE FOLDER= "/Users/tobiasmaile/Library/Application Support/Maven2"
Connecting to  "/Users/tobiasmaile/Library/Application Support/Maven2/ligand.db" 

loadAdducts() /Applications/Maven8-1-9.app/Contents/MacOS/../Resources/methods/ADDUCTS.csv count=42
Read in classification model /Applications/Maven8-1-9.app/Contents/MacOS/../Resources/methods/default.model
QObject::connect: No such signal BackgroundPeakUpdate::newPeakGroup(PeakGroup*,bool)
QObject::connect:  (receiver name: 'CalibrateDialog')
 EicWidget::computeEICs()
 EicWidget::replot(PeakGroup* group ) group= 0x0
 EicWidget::setFocusLine(float rt)
updateDatabaseList()
ligandwidget::showTable() 20190502-N-acyl_AAs-pos
setIonizationMode:  0
setIonizationMode:  -1
changeUserAdduct::[M-H]-
 EicWidget::replot(PeakGroup* group ) group= 0x0
 EicWidget::setFocusLine(float rt)
updateDatabaseList()
objc[2995]: Class FIFinderSyncExtensionHost is implemented in both /System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit (0x7fff9fe033d8) and /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FinderSyncCollaborationFileProviderOverride.bundle/Contents/MacOS/FinderSyncCollaborationFileProviderOverride (0x1125d6f50). One of the two will be used. Which one is undefined.
openning..  "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-0129-M004A_merged_mzkitchen_v7_output_Mon_Oct_14_15-51-33_PDT_2019/peakdetector.mzrollDB"
loadCompoundsSQL: query error  QSqlError("", "Unable to fetch row", "No query")
Found!!!!  "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-01_Blank.mzML"
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-01_Blank.mzML"
calculateMzRtRange() rt=0.00334505-32.8499 mz=50.0009-1999.98
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-01_Blank.mzML
loadSample time (msec) =  305
enumerateSRMScans: 4916
calculateMzRtRange() rt=0.00334505-32.8499 mz=50.0009-1999.98
enumerateSRMScans: 4916
calculateMzRtRange() rt=0.00334505-32.8499 mz=50.0009-1999.98
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-02_Blank.mzML"
calculateMzRtRange() rt=0.00330726-60.0065 mz=50.0013-3775.07
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-02_Blank.mzML
loadSample time (msec) =  487
enumerateSRMScans: 9738
calculateMzRtRange() rt=0.00330726-60.0065 mz=50.0013-3775.07
enumerateSRMScans: 9738
calculateMzRtRange() rt=0.00330726-60.0065 mz=50.0013-3775.07
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-03_Blank.mzML"
calculateMzRtRange() rt=0.00329695-60.0058 mz=50.0024-5078.79
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-03_Blank.mzML
loadSample time (msec) =  512
enumerateSRMScans: 9731
calculateMzRtRange() rt=0.00329695-60.0058 mz=50.0024-5078.79
enumerateSRMScans: 9731
calculateMzRtRange() rt=0.00329695-60.0058 mz=50.0024-5078.79
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-04_DeuteratedLipidStd.mzML"
calculateMzRtRange() rt=0.00327366-60.0025 mz=50.0009-1999.91
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  474
enumerateSRMScans: 9806
calculateMzRtRange() rt=0.00327366-60.0025 mz=50.0009-1999.91
enumerateSRMScans: 9806
calculateMzRtRange() rt=0.00327366-60.0025 mz=50.0009-1999.91
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-05_std008A.mzML"
calculateMzRtRange() rt=0.0032674-60.0069 mz=49.9995-2368.58
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  459
enumerateSRMScans: 10262
calculateMzRtRange() rt=0.0032674-60.0069 mz=49.9995-2368.58
enumerateSRMScans: 10262
calculateMzRtRange() rt=0.0032674-60.0069 mz=49.9995-2368.58
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-06_NegMTBE.mzML"
calculateMzRtRange() rt=0.00326345-60.0085 mz=49.9996-4457.51
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  451
enumerateSRMScans: 9936
calculateMzRtRange() rt=0.00326345-60.0085 mz=49.9996-4457.51
enumerateSRMScans: 9936
calculateMzRtRange() rt=0.00326345-60.0085 mz=49.9996-4457.51
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-07_NegMOP.mzML"
calculateMzRtRange() rt=0.00333691-60.0125 mz=49.9993-2123.96
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  445
enumerateSRMScans: 9952
calculateMzRtRange() rt=0.00333691-60.0125 mz=49.9993-2123.96
enumerateSRMScans: 9952
calculateMzRtRange() rt=0.00333691-60.0125 mz=49.9993-2123.96
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-08_MTBE1.mzML"
calculateMzRtRange() rt=0.00327261-60.0032 mz=50.0019-4682.27
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  437
enumerateSRMScans: 10424
calculateMzRtRange() rt=0.00327261-60.0032 mz=50.0019-4682.27
enumerateSRMScans: 10424
calculateMzRtRange() rt=0.00327261-60.0032 mz=50.0019-4682.27
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-09_MOP1.mzML"
calculateMzRtRange() rt=0.00325525-60.0033 mz=49.9992-2259.01
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  456
enumerateSRMScans: 10420
calculateMzRtRange() rt=0.00325525-60.0033 mz=49.9992-2259.01
enumerateSRMScans: 10420
calculateMzRtRange() rt=0.00325525-60.0033 mz=49.9992-2259.01
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-10_MTBE2.mzML"
calculateMzRtRange() rt=0.00326793-60.0088 mz=49.9993-2395.48
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  443
enumerateSRMScans: 10453
calculateMzRtRange() rt=0.00326793-60.0088 mz=49.9993-2395.48
enumerateSRMScans: 10453
calculateMzRtRange() rt=0.00326793-60.0088 mz=49.9993-2395.48
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-11_MOP2.mzML"
calculateMzRtRange() rt=0.00326485-60.0063 mz=50.0042-3317.41
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  436
enumerateSRMScans: 10401
calculateMzRtRange() rt=0.00326485-60.0063 mz=50.0042-3317.41
enumerateSRMScans: 10401
calculateMzRtRange() rt=0.00326485-60.0063 mz=50.0042-3317.41
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-12_MTBE3.mzML"
calculateMzRtRange() rt=0.0032658-60.0062 mz=50.0019-2377.82
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  437
enumerateSRMScans: 10387
calculateMzRtRange() rt=0.0032658-60.0062 mz=50.0019-2377.82
enumerateSRMScans: 10387
calculateMzRtRange() rt=0.0032658-60.0062 mz=50.0019-2377.82
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-13_MOP3.mzML"
calculateMzRtRange() rt=0.00327408-60.0049 mz=50.0014-2316.68
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  436
enumerateSRMScans: 10378
calculateMzRtRange() rt=0.00327408-60.0049 mz=50.0014-2316.68
enumerateSRMScans: 10378
calculateMzRtRange() rt=0.00327408-60.0049 mz=50.0014-2316.68
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-14_MTBE4.mzML"
calculateMzRtRange() rt=0.00330916-59.9994 mz=50.0033-2312.91
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  433
enumerateSRMScans: 10351
calculateMzRtRange() rt=0.00330916-59.9994 mz=50.0033-2312.91
enumerateSRMScans: 10351
calculateMzRtRange() rt=0.00330916-59.9994 mz=50.0033-2312.91
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-15_MOP4.mzML"
calculateMzRtRange() rt=0.00327052-60.0091 mz=49.9993-2407.79
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  436
enumerateSRMScans: 10334
calculateMzRtRange() rt=0.00327052-60.0091 mz=49.9993-2407.79
enumerateSRMScans: 10334
calculateMzRtRange() rt=0.00327052-60.0091 mz=49.9993-2407.79
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-16_MTBE5.mzML"
calculateMzRtRange() rt=0.00325678-60.0074 mz=50.0034-3444.01
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  432
enumerateSRMScans: 10405
calculateMzRtRange() rt=0.00325678-60.0074 mz=50.0034-3444.01
enumerateSRMScans: 10405
calculateMzRtRange() rt=0.00325678-60.0074 mz=50.0034-3444.01
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-17_MOP5.mzML"
xml parser failed: XML structure problemcalculateMzRtRange() rt=0.00325825-25.0698 mz=50.0033-1999.96
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  169
enumerateSRMScans: 4186
calculateMzRtRange() rt=0.00325825-25.0698 mz=50.0033-1999.96
enumerateSRMScans: 4186
calculateMzRtRange() rt=0.00325825-25.0698 mz=50.0033-1999.96
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-18_std008A.mzML"
calculateMzRtRange() rt=0.00328145-60.004 mz=50.001-5006.29
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  430
enumerateSRMScans: 10277
calculateMzRtRange() rt=0.00328145-60.004 mz=50.001-5006.29
enumerateSRMScans: 10277
calculateMzRtRange() rt=0.00328145-60.004 mz=50.001-5006.29
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-19_DeuteratedLipidStd.mzML"
calculateMzRtRange() rt=0.00325957-60.0001 mz=49.9991-4654.99
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  442
enumerateSRMScans: 9934
calculateMzRtRange() rt=0.00325957-60.0001 mz=49.9991-4654.99
enumerateSRMScans: 9934
calculateMzRtRange() rt=0.00325957-60.0001 mz=49.9991-4654.99
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-20_Blank.mzML"
calculateMzRtRange() rt=0.00325826-60.0087 mz=50.0023-1999.96
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-M004-20_Blank.mzML
loadSample time (msec) =  466
enumerateSRMScans: 9802
calculateMzRtRange() rt=0.00325826-60.0087 mz=50.0023-1999.96
enumerateSRMScans: 9802
calculateMzRtRange() rt=0.00325826-60.0087 mz=50.0023-1999.96
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-01_TrueBlank.mzML"
calculateMzRtRange() rt=0.00326021-60.0113 mz=49.9991-2381.61
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-01_TrueBlank.mzML
loadSample time (msec) =  506
enumerateSRMScans: 10702
calculateMzRtRange() rt=0.00326021-60.0113 mz=49.9991-2381.61
enumerateSRMScans: 10702
calculateMzRtRange() rt=0.00326021-60.0113 mz=49.9991-2381.61
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-02_TrueBlank.mzML"
calculateMzRtRange() rt=0.00334428-60.0075 mz=50.0005-2357.91
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-02_TrueBlank.mzML
loadSample time (msec) =  463
enumerateSRMScans: 9427
calculateMzRtRange() rt=0.00334428-60.0075 mz=50.0005-2357.91
enumerateSRMScans: 9427
calculateMzRtRange() rt=0.00334428-60.0075 mz=50.0005-2357.91
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-03_std008A.mzML"
calculateMzRtRange() rt=0.00326721-60.0118 mz=49.9992-2365.06
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  454
enumerateSRMScans: 9926
calculateMzRtRange() rt=0.00326721-60.0118 mz=49.9992-2365.06
enumerateSRMScans: 9926
calculateMzRtRange() rt=0.00326721-60.0118 mz=49.9992-2365.06
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-04_Blank.mzML"
calculateMzRtRange() rt=0.00326065-60.019 mz=49.9991-2378.72
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-04_Blank.mzML
loadSample time (msec) =  438
enumerateSRMScans: 9515
calculateMzRtRange() rt=0.00326065-60.019 mz=49.9991-2378.72
enumerateSRMScans: 9515
calculateMzRtRange() rt=0.00326065-60.019 mz=49.9991-2378.72
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-05_LoadControl.mzML"
calculateMzRtRange() rt=0.0032872-59.9983 mz=50.0004-2722.5
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  445
enumerateSRMScans: 9672
calculateMzRtRange() rt=0.0032872-59.9983 mz=50.0004-2722.5
enumerateSRMScans: 9672
calculateMzRtRange() rt=0.0032872-59.9983 mz=50.0004-2722.5
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-06_MTBE-W1-G.mzML"
calculateMzRtRange() rt=0.00326427-59.9995 mz=49.9992-2381.81
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  431
enumerateSRMScans: 9705
calculateMzRtRange() rt=0.00326427-59.9995 mz=49.9992-2381.81
enumerateSRMScans: 9705
calculateMzRtRange() rt=0.00326427-59.9995 mz=49.9992-2381.81
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-07_MTBE-P1-G.mzML"
calculateMzRtRange() rt=0.00331153-60.0044 mz=49.9999-4049.16
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  435
enumerateSRMScans: 10119
calculateMzRtRange() rt=0.00331153-60.0044 mz=49.9999-4049.16
enumerateSRMScans: 10119
calculateMzRtRange() rt=0.00331153-60.0044 mz=49.9999-4049.16
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-08_MTBE-W1-L.mzML"
calculateMzRtRange() rt=0.00325735-60.0021 mz=50.0042-2262.28
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  439
enumerateSRMScans: 9866
calculateMzRtRange() rt=0.00325735-60.0021 mz=50.0042-2262.28
enumerateSRMScans: 9866
calculateMzRtRange() rt=0.00325735-60.0021 mz=50.0042-2262.28
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-09_MTBE-P1-L.mzML"
calculateMzRtRange() rt=0.00327185-60.0058 mz=49.9991-2281.6
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  446
enumerateSRMScans: 10282
calculateMzRtRange() rt=0.00327185-60.0058 mz=49.9991-2281.6
enumerateSRMScans: 10282
calculateMzRtRange() rt=0.00327185-60.0058 mz=49.9991-2281.6
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-10_MTBE-W1-R.mzML"
calculateMzRtRange() rt=0.0032864-60.0086 mz=50.0005-4020.29
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  453
enumerateSRMScans: 9865
calculateMzRtRange() rt=0.0032864-60.0086 mz=50.0005-4020.29
enumerateSRMScans: 9865
calculateMzRtRange() rt=0.0032864-60.0086 mz=50.0005-4020.29
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-11_MTBE-P1-R.mzML"
calculateMzRtRange() rt=0.00331925-60.0051 mz=49.9991-2821.99
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  456
enumerateSRMScans: 10289
calculateMzRtRange() rt=0.00331925-60.0051 mz=49.9991-2821.99
enumerateSRMScans: 10289
calculateMzRtRange() rt=0.00331925-60.0051 mz=49.9991-2821.99
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-12_Folch-W1-G.mzML"
calculateMzRtRange() rt=0.00330628-60.0016 mz=50.0029-2760.61
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  434
enumerateSRMScans: 9888
calculateMzRtRange() rt=0.00330628-60.0016 mz=50.0029-2760.61
enumerateSRMScans: 9888
calculateMzRtRange() rt=0.00330628-60.0016 mz=50.0029-2760.61
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-13_Folch-P1-G.mzML"
calculateMzRtRange() rt=0.00326856-59.999 mz=50.0005-2163.67
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  441
enumerateSRMScans: 10287
calculateMzRtRange() rt=0.00326856-59.999 mz=50.0005-2163.67
enumerateSRMScans: 10287
calculateMzRtRange() rt=0.00326856-59.999 mz=50.0005-2163.67
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-14_Folch-W1-L.mzML"
calculateMzRtRange() rt=0.00328251-59.9994 mz=49.999-5812.31
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  469
enumerateSRMScans: 10045
calculateMzRtRange() rt=0.00328251-59.9994 mz=49.999-5812.31
enumerateSRMScans: 10045
calculateMzRtRange() rt=0.00328251-59.9994 mz=49.999-5812.31
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-15_Folch-P1-L.mzML"
calculateMzRtRange() rt=0.00326215-60.002 mz=49.9998-2063.69
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  474
enumerateSRMScans: 10444
calculateMzRtRange() rt=0.00326215-60.002 mz=49.9998-2063.69
enumerateSRMScans: 10444
calculateMzRtRange() rt=0.00326215-60.002 mz=49.9998-2063.69
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-16_Folch-W1-R.mzML"
calculateMzRtRange() rt=0.00326488-60.009 mz=49.9999-2049.6
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  450
enumerateSRMScans: 9953
calculateMzRtRange() rt=0.00326488-60.009 mz=49.9999-2049.6
enumerateSRMScans: 9953
calculateMzRtRange() rt=0.00326488-60.009 mz=49.9999-2049.6
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-17_Folch-P1-R.mzML"
Failed to load /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-17_Folch-P1-R.mzML
sample has no data
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  0
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-18_LoadControl.mzML"
calculateMzRtRange() rt=0.00344453-59.996 mz=50.0009-2092.44
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  459
enumerateSRMScans: 9879
calculateMzRtRange() rt=0.00344453-59.996 mz=50.0009-2092.44
enumerateSRMScans: 9879
calculateMzRtRange() rt=0.00344453-59.996 mz=50.0009-2092.44
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-19_MTBE-W2-G.mzML"
calculateMzRtRange() rt=0.00326491-60.0057 mz=50.0002-2397.18
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  447
enumerateSRMScans: 9889
calculateMzRtRange() rt=0.00326491-60.0057 mz=50.0002-2397.18
enumerateSRMScans: 9889
calculateMzRtRange() rt=0.00326491-60.0057 mz=50.0002-2397.18
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-20_MTBE-P2-G.mzML"
calculateMzRtRange() rt=0.00333383-59.9935 mz=49.9995-2909.1
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  501
enumerateSRMScans: 10288
calculateMzRtRange() rt=0.00333383-59.9935 mz=49.9995-2909.1
enumerateSRMScans: 10288
calculateMzRtRange() rt=0.00333383-59.9935 mz=49.9995-2909.1
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-21_MTBE-W2-L.mzML"
calculateMzRtRange() rt=0.00326315-60.0202 mz=50.0049-2394.6
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  461
enumerateSRMScans: 10071
calculateMzRtRange() rt=0.00326315-60.0202 mz=50.0049-2394.6
enumerateSRMScans: 10071
calculateMzRtRange() rt=0.00326315-60.0202 mz=50.0049-2394.6
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-22_MTBE-P2-L.mzML"
calculateMzRtRange() rt=0.00325943-60.0035 mz=50.0001-2049.97
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  464
enumerateSRMScans: 10438
calculateMzRtRange() rt=0.00325943-60.0035 mz=50.0001-2049.97
enumerateSRMScans: 10438
calculateMzRtRange() rt=0.00325943-60.0035 mz=50.0001-2049.97
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-23_MTBE-W2-R.mzML"
calculateMzRtRange() rt=0.0033105-60.0169 mz=50.0052-2350.21
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  440
enumerateSRMScans: 10022
calculateMzRtRange() rt=0.0033105-60.0169 mz=50.0052-2350.21
enumerateSRMScans: 10022
calculateMzRtRange() rt=0.0033105-60.0169 mz=50.0052-2350.21
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-24_MTBE-P2-R.mzML"
calculateMzRtRange() rt=0.0032608-60.0105 mz=49.9996-2413.93
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  453
enumerateSRMScans: 10235
calculateMzRtRange() rt=0.0032608-60.0105 mz=49.9996-2413.93
enumerateSRMScans: 10235
calculateMzRtRange() rt=0.0032608-60.0105 mz=49.9996-2413.93
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-25_Folch-W2-G.mzML"
calculateMzRtRange() rt=0.00328651-59.9972 mz=50.0002-4010.07
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  434
enumerateSRMScans: 9938
calculateMzRtRange() rt=0.00328651-59.9972 mz=50.0002-4010.07
enumerateSRMScans: 9938
calculateMzRtRange() rt=0.00328651-59.9972 mz=50.0002-4010.07
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-26_Folch-P2-G.mzML"
calculateMzRtRange() rt=0.00325896-60.0092 mz=49.9994-2374.26
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  435
enumerateSRMScans: 10393
calculateMzRtRange() rt=0.00325896-60.0092 mz=49.9994-2374.26
enumerateSRMScans: 10393
calculateMzRtRange() rt=0.00325896-60.0092 mz=49.9994-2374.26
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-27_Folch-W2-L.mzML"
calculateMzRtRange() rt=0.0032586-60.0108 mz=49.9998-2349.67
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  445
enumerateSRMScans: 10135
calculateMzRtRange() rt=0.0032586-60.0108 mz=49.9998-2349.67
enumerateSRMScans: 10135
calculateMzRtRange() rt=0.0032586-60.0108 mz=49.9998-2349.67
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-28_Folch-P2-L.mzML"
calculateMzRtRange() rt=0.00326095-60.0031 mz=50.0009-3074.15
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  449
enumerateSRMScans: 10495
calculateMzRtRange() rt=0.00326095-60.0031 mz=50.0009-3074.15
enumerateSRMScans: 10495
calculateMzRtRange() rt=0.00326095-60.0031 mz=50.0009-3074.15
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-29_Folch-W2-R.mzML"
calculateMzRtRange() rt=0.00329263-60.0113 mz=49.9998-5714.64
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  441
enumerateSRMScans: 10082
calculateMzRtRange() rt=0.00329263-60.0113 mz=49.9998-5714.64
enumerateSRMScans: 10082
calculateMzRtRange() rt=0.00329263-60.0113 mz=49.9998-5714.64
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-30_Folch-P2-R.mzML"
calculateMzRtRange() rt=0.0032625-60.0069 mz=49.999-4537.29
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  463
enumerateSRMScans: 10419
calculateMzRtRange() rt=0.0032625-60.0069 mz=49.999-4537.29
enumerateSRMScans: 10419
calculateMzRtRange() rt=0.0032625-60.0069 mz=49.999-4537.29
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-31_LoadControl.mzML"
calculateMzRtRange() rt=0.00326793-60.007 mz=49.9991-2286.67
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  440
enumerateSRMScans: 9924
calculateMzRtRange() rt=0.00326793-60.007 mz=49.9991-2286.67
enumerateSRMScans: 9924
calculateMzRtRange() rt=0.00326793-60.007 mz=49.9991-2286.67
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-32_MTBE-W3-G.mzML"
calculateMzRtRange() rt=0.00331708-60.0104 mz=50.0003-4159.74
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  448
enumerateSRMScans: 9916
calculateMzRtRange() rt=0.00331708-60.0104 mz=50.0003-4159.74
enumerateSRMScans: 9916
calculateMzRtRange() rt=0.00331708-60.0104 mz=50.0003-4159.74
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-33_MTBE-P3-G.mzML"
calculateMzRtRange() rt=0.00329116-60.003 mz=50.0025-2287.46
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  444
enumerateSRMScans: 10396
calculateMzRtRange() rt=0.00329116-60.003 mz=50.0025-2287.46
enumerateSRMScans: 10396
calculateMzRtRange() rt=0.00329116-60.003 mz=50.0025-2287.46
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-34_MTBE-W3-L.mzML"
calculateMzRtRange() rt=0.00326278-60.0032 mz=49.9998-5244.31
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  443
enumerateSRMScans: 10134
calculateMzRtRange() rt=0.00326278-60.0032 mz=49.9998-5244.31
enumerateSRMScans: 10134
calculateMzRtRange() rt=0.00326278-60.0032 mz=49.9998-5244.31
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-35_MTBE-P3-L.mzML"
calculateMzRtRange() rt=0.00328901-60.0061 mz=50.0008-2355.73
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  452
enumerateSRMScans: 10471
calculateMzRtRange() rt=0.00328901-60.0061 mz=50.0008-2355.73
enumerateSRMScans: 10471
calculateMzRtRange() rt=0.00328901-60.0061 mz=50.0008-2355.73
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-36_MTBE-W3-R.mzML"
calculateMzRtRange() rt=0.0032578-60.0128 mz=49.9991-4598.91
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  449
enumerateSRMScans: 10099
calculateMzRtRange() rt=0.0032578-60.0128 mz=49.9991-4598.91
enumerateSRMScans: 10099
calculateMzRtRange() rt=0.0032578-60.0128 mz=49.9991-4598.91
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-37_MTBE-P3-R.mzML"
calculateMzRtRange() rt=0.00326515-60.0088 mz=50.0072-2212.47
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  450
enumerateSRMScans: 10442
calculateMzRtRange() rt=0.00326515-60.0088 mz=50.0072-2212.47
enumerateSRMScans: 10442
calculateMzRtRange() rt=0.00326515-60.0088 mz=50.0072-2212.47
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-38_Folch-W3-G.mzML"
calculateMzRtRange() rt=0.00328665-60.005 mz=49.9994-2167.1
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  451
enumerateSRMScans: 10062
calculateMzRtRange() rt=0.00328665-60.005 mz=49.9994-2167.1
enumerateSRMScans: 10062
calculateMzRtRange() rt=0.00328665-60.005 mz=49.9994-2167.1
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-39_Folch-P3-G.mzML"
calculateMzRtRange() rt=0.0032633-60.0011 mz=50.0013-2768.78
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  472
enumerateSRMScans: 10506
calculateMzRtRange() rt=0.0032633-60.0011 mz=50.0013-2768.78
enumerateSRMScans: 10506
calculateMzRtRange() rt=0.0032633-60.0011 mz=50.0013-2768.78
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-40_Folch-W3-L.mzML"
calculateMzRtRange() rt=0.00326311-60.0084 mz=49.9998-5000.97
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  451
enumerateSRMScans: 10216
calculateMzRtRange() rt=0.00326311-60.0084 mz=49.9998-5000.97
enumerateSRMScans: 10216
calculateMzRtRange() rt=0.00326311-60.0084 mz=49.9998-5000.97
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-41_Folch-P3-L.mzML"
calculateMzRtRange() rt=0.00326973-60.0051 mz=50-1999.98
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  453
enumerateSRMScans: 10582
calculateMzRtRange() rt=0.00326973-60.0051 mz=50-1999.98
enumerateSRMScans: 10582
calculateMzRtRange() rt=0.00326973-60.0051 mz=50-1999.98
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-42_Folch-W3-R.mzML"
calculateMzRtRange() rt=0.00326206-60.0053 mz=49.9999-2325.46
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  448
enumerateSRMScans: 10157
calculateMzRtRange() rt=0.00326206-60.0053 mz=49.9999-2325.46
enumerateSRMScans: 10157
calculateMzRtRange() rt=0.00326206-60.0053 mz=49.9999-2325.46
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-43_Folch-P3-R.mzML"
calculateMzRtRange() rt=0.0032675-60.0181 mz=50.0012-2359.65
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  451
enumerateSRMScans: 10557
calculateMzRtRange() rt=0.0032675-60.0181 mz=50.0012-2359.65
enumerateSRMScans: 10557
calculateMzRtRange() rt=0.0032675-60.0181 mz=50.0012-2359.65
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-44_LoadControl.mzML"
calculateMzRtRange() rt=0.00326056-60.0084 mz=49.9992-2181.14
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  448
enumerateSRMScans: 9999
calculateMzRtRange() rt=0.00326056-60.0084 mz=49.9992-2181.14
enumerateSRMScans: 9999
calculateMzRtRange() rt=0.00326056-60.0084 mz=49.9992-2181.14
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-45_MTBE-W4-G.mzML"
calculateMzRtRange() rt=0.00326384-60.0084 mz=50.0029-5326.17
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  444
enumerateSRMScans: 10124
calculateMzRtRange() rt=0.00326384-60.0084 mz=50.0029-5326.17
enumerateSRMScans: 10124
calculateMzRtRange() rt=0.00326384-60.0084 mz=50.0029-5326.17
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-46_MTBE-P4-G.mzML"
calculateMzRtRange() rt=0.00328946-60.0036 mz=50.0009-2245.01
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  442
enumerateSRMScans: 10413
calculateMzRtRange() rt=0.00328946-60.0036 mz=50.0009-2245.01
enumerateSRMScans: 10413
calculateMzRtRange() rt=0.00328946-60.0036 mz=50.0009-2245.01
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-47_MTBE-W4-L.mzML"
calculateMzRtRange() rt=0.003313-60.0056 mz=50.0045-5711.14
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  441
enumerateSRMScans: 10186
calculateMzRtRange() rt=0.003313-60.0056 mz=50.0045-5711.14
enumerateSRMScans: 10186
calculateMzRtRange() rt=0.003313-60.0056 mz=50.0045-5711.14
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-47a_TrueBlank.mzML"
calculateMzRtRange() rt=0.00316037-60.0105 mz=50.0005-2191.2
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-47a_TrueBlank.mzML
loadSample time (msec) =  491
enumerateSRMScans: 9706
calculateMzRtRange() rt=0.00316037-60.0105 mz=50.0005-2191.2
enumerateSRMScans: 9706
calculateMzRtRange() rt=0.00316037-60.0105 mz=50.0005-2191.2
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-48_MTBE-P4-L_191010104201.mzML"
calculateMzRtRange() rt=0.00315928-60.0112 mz=50.0015-5088.94
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  452
enumerateSRMScans: 9981
calculateMzRtRange() rt=0.00315928-60.0112 mz=50.0015-5088.94
enumerateSRMScans: 9981
calculateMzRtRange() rt=0.00315928-60.0112 mz=50.0015-5088.94
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-49_MTBE-W4-R.mzML"
calculateMzRtRange() rt=0.0031574-60.0024 mz=50.0045-2159.27
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  434
enumerateSRMScans: 9338
calculateMzRtRange() rt=0.0031574-60.0024 mz=50.0045-2159.27
enumerateSRMScans: 9338
calculateMzRtRange() rt=0.0031574-60.0024 mz=50.0045-2159.27
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-50_MTBE-P4-R.mzML"
calculateMzRtRange() rt=0.00315406-60.0116 mz=50.0012-5056.81
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  459
enumerateSRMScans: 10055
calculateMzRtRange() rt=0.00315406-60.0116 mz=50.0012-5056.81
enumerateSRMScans: 10055
calculateMzRtRange() rt=0.00315406-60.0116 mz=50.0012-5056.81
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-51_Folch-W4-G.mzML"
calculateMzRtRange() rt=0.00315585-60.0037 mz=49.9995-2373.2
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  444
enumerateSRMScans: 9769
calculateMzRtRange() rt=0.00315585-60.0037 mz=49.9995-2373.2
enumerateSRMScans: 9769
calculateMzRtRange() rt=0.00315585-60.0037 mz=49.9995-2373.2
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-52_Folch-P4-G.mzML"
calculateMzRtRange() rt=0.00315908-59.9993 mz=50.0036-2320.65
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  451
enumerateSRMScans: 10255
calculateMzRtRange() rt=0.00315908-59.9993 mz=50.0036-2320.65
enumerateSRMScans: 10255
calculateMzRtRange() rt=0.00315908-59.9993 mz=50.0036-2320.65
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-53_Folch-W4-L.mzML"
calculateMzRtRange() rt=0.00315745-60.008 mz=50.0011-2313.86
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  456
enumerateSRMScans: 9868
calculateMzRtRange() rt=0.00315745-60.008 mz=50.0011-2313.86
enumerateSRMScans: 9868
calculateMzRtRange() rt=0.00315745-60.008 mz=50.0011-2313.86
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-54_Folch-P4-L.mzML"
calculateMzRtRange() rt=0.00315397-60.0055 mz=50.001-2074.64
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  440
enumerateSRMScans: 10304
calculateMzRtRange() rt=0.00315397-60.0055 mz=50.001-2074.64
enumerateSRMScans: 10304
calculateMzRtRange() rt=0.00315397-60.0055 mz=50.001-2074.64
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-55_Folch-W4-R.mzML"
calculateMzRtRange() rt=0.00319588-60.0031 mz=50.0013-2351.96
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  452
enumerateSRMScans: 9889
calculateMzRtRange() rt=0.00319588-60.0031 mz=50.0013-2351.96
enumerateSRMScans: 9889
calculateMzRtRange() rt=0.00319588-60.0031 mz=50.0013-2351.96
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-56_Folch-P4-R.mzML"
xml parser failed: XML structure problemcalculateMzRtRange() rt=0.00316041-28.299 mz=50.0029-2060.11
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  211
enumerateSRMScans: 4906
calculateMzRtRange() rt=0.00316041-28.299 mz=50.0029-2060.11
enumerateSRMScans: 4906
calculateMzRtRange() rt=0.00316041-28.299 mz=50.0029-2060.11
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-57_LoadControl.mzML"
calculateMzRtRange() rt=0.00315618-60.0114 mz=49.9993-2386.71
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  441
enumerateSRMScans: 9786
calculateMzRtRange() rt=0.00315618-60.0114 mz=49.9993-2386.71
enumerateSRMScans: 9786
calculateMzRtRange() rt=0.00315618-60.0114 mz=49.9993-2386.71
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-58_std008A.mzML"
calculateMzRtRange() rt=0.00315076-60.0049 mz=50.0026-4176
Recalculating Ms2 Precursor Masses
loadSample time (msec) =  455
enumerateSRMScans: 10102
calculateMzRtRange() rt=0.00315076-60.0049 mz=50.0026-4176
enumerateSRMScans: 10102
calculateMzRtRange() rt=0.00315076-60.0049 mz=50.0026-4176
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-59_Blank.mzML"
calculateMzRtRange() rt=0.00315268-59.9999 mz=50.0024-2390.8
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-59_Blank.mzML
loadSample time (msec) =  463
enumerateSRMScans: 9741
calculateMzRtRange() rt=0.00315268-59.9999 mz=50.0024-2390.8
enumerateSRMScans: 9741
calculateMzRtRange() rt=0.00315268-59.9999 mz=50.0024-2390.8
setIonizationMode:  -1
Loading sample: "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-60_TrueBlank.mzML"
calculateMzRtRange() rt=0.00319487-60.0075 mz=50.0011-1999.97
Recalculating Ms2 Precursor Masses
Found Blank: /Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0129-M004-60_TrueBlank.mzML
loadSample time (msec) =  450
enumerateSRMScans: 9840
calculateMzRtRange() rt=0.00319487-60.0075 mz=50.0011-1999.97
enumerateSRMScans: 9840
calculateMzRtRange() rt=0.00319487-60.0075 mz=50.0011-1999.97
setIonizationMode:  -1
getSampleInfoSQLITE() 0
Loading sampleId 0 "X0128-M004-01_Blank.mzML"
Loading sampleId 1 "X0128-M004-02_Blank.mzML"
Loading sampleId 2 "X0128-M004-03_Blank.mzML"
Loading sampleId 3 "X0128-M004-04_DeuteratedLipidStd.mzML"
Loading sampleId 4 "X0128-M004-05_std008A.mzML"
Loading sampleId 5 "X0128-M004-06_NegMTBE.mzML"
Loading sampleId 6 "X0128-M004-07_NegMOP.mzML"
Loading sampleId 7 "X0128-M004-08_MTBE1.mzML"
Loading sampleId 8 "X0128-M004-09_MOP1.mzML"
Loading sampleId 9 "X0128-M004-10_MTBE2.mzML"
Loading sampleId 10 "X0128-M004-11_MOP2.mzML"
Loading sampleId 11 "X0128-M004-12_MTBE3.mzML"
Loading sampleId 12 "X0128-M004-13_MOP3.mzML"
Loading sampleId 13 "X0128-M004-14_MTBE4.mzML"
Loading sampleId 14 "X0128-M004-15_MOP4.mzML"
Loading sampleId 15 "X0128-M004-16_MTBE5.mzML"
Loading sampleId 16 "X0128-M004-17_MOP5.mzML"
Loading sampleId 17 "X0128-M004-18_std008A.mzML"
Loading sampleId 18 "X0128-M004-19_DeuteratedLipidStd.mzML"
Loading sampleId 19 "X0128-M004-20_Blank.mzML"
Loading sampleId 20 "X0129-M004-01_TrueBlank.mzML"
Loading sampleId 21 "X0129-M004-02_TrueBlank.mzML"
Loading sampleId 22 "X0129-M004-03_std008A.mzML"
Loading sampleId 23 "X0129-M004-04_Blank.mzML"
Loading sampleId 24 "X0129-M004-05_LoadControl.mzML"
Loading sampleId 25 "X0129-M004-06_MTBE-W1-G.mzML"
Loading sampleId 26 "X0129-M004-07_MTBE-P1-G.mzML"
Loading sampleId 27 "X0129-M004-08_MTBE-W1-L.mzML"
Loading sampleId 28 "X0129-M004-09_MTBE-P1-L.mzML"
Loading sampleId 29 "X0129-M004-10_MTBE-W1-R.mzML"
Loading sampleId 30 "X0129-M004-11_MTBE-P1-R.mzML"
Loading sampleId 31 "X0129-M004-12_Folch-W1-G.mzML"
Loading sampleId 32 "X0129-M004-13_Folch-P1-G.mzML"
Loading sampleId 33 "X0129-M004-14_Folch-W1-L.mzML"
Loading sampleId 34 "X0129-M004-15_Folch-P1-L.mzML"
Loading sampleId 35 "X0129-M004-16_Folch-W1-R.mzML"
Loading sampleId 37 "X0129-M004-18_LoadControl.mzML"
Loading sampleId 38 "X0129-M004-19_MTBE-W2-G.mzML"
Loading sampleId 39 "X0129-M004-20_MTBE-P2-G.mzML"
Loading sampleId 40 "X0129-M004-21_MTBE-W2-L.mzML"
Loading sampleId 41 "X0129-M004-22_MTBE-P2-L.mzML"
Loading sampleId 42 "X0129-M004-23_MTBE-W2-R.mzML"
Loading sampleId 43 "X0129-M004-24_MTBE-P2-R.mzML"
Loading sampleId 44 "X0129-M004-25_Folch-W2-G.mzML"
Loading sampleId 45 "X0129-M004-26_Folch-P2-G.mzML"
Loading sampleId 46 "X0129-M004-27_Folch-W2-L.mzML"
Loading sampleId 47 "X0129-M004-28_Folch-P2-L.mzML"
Loading sampleId 48 "X0129-M004-29_Folch-W2-R.mzML"
Loading sampleId 49 "X0129-M004-30_Folch-P2-R.mzML"
Loading sampleId 50 "X0129-M004-31_LoadControl.mzML"
Loading sampleId 51 "X0129-M004-32_MTBE-W3-G.mzML"
Loading sampleId 52 "X0129-M004-33_MTBE-P3-G.mzML"
Loading sampleId 53 "X0129-M004-34_MTBE-W3-L.mzML"
Loading sampleId 54 "X0129-M004-35_MTBE-P3-L.mzML"
Loading sampleId 55 "X0129-M004-36_MTBE-W3-R.mzML"
Loading sampleId 56 "X0129-M004-37_MTBE-P3-R.mzML"
Loading sampleId 57 "X0129-M004-38_Folch-W3-G.mzML"
Loading sampleId 58 "X0129-M004-39_Folch-P3-G.mzML"
Loading sampleId 59 "X0129-M004-40_Folch-W3-L.mzML"
Loading sampleId 60 "X0129-M004-41_Folch-P3-L.mzML"
Loading sampleId 61 "X0129-M004-42_Folch-W3-R.mzML"
Loading sampleId 62 "X0129-M004-43_Folch-P3-R.mzML"
Loading sampleId 63 "X0129-M004-44_LoadControl.mzML"
Loading sampleId 64 "X0129-M004-45_MTBE-W4-G.mzML"
Loading sampleId 65 "X0129-M004-46_MTBE-P4-G.mzML"
Loading sampleId 66 "X0129-M004-47_MTBE-W4-L.mzML"
Loading sampleId 67 "X0129-M004-47a_TrueBlank.mzML"
Loading sampleId 68 "X0129-M004-48_MTBE-P4-L_191010104201.mzML"
Loading sampleId 69 "X0129-M004-49_MTBE-W4-R.mzML"
Loading sampleId 70 "X0129-M004-50_MTBE-P4-R.mzML"
Loading sampleId 71 "X0129-M004-51_Folch-W4-G.mzML"
Loading sampleId 72 "X0129-M004-52_Folch-P4-G.mzML"
Loading sampleId 73 "X0129-M004-53_Folch-W4-L.mzML"
Loading sampleId 74 "X0129-M004-54_Folch-P4-L.mzML"
Loading sampleId 75 "X0129-M004-55_Folch-W4-R.mzML"
Loading sampleId 76 "X0129-M004-56_Folch-P4-R.mzML"
Loading sampleId 77 "X0129-M004-57_LoadControl.mzML"
Loading sampleId 78 "X0129-M004-58_std008A.mzML"
Loading sampleId 79 "X0129-M004-59_Blank.mzML"
Loading sampleId 80 "X0129-M004-60_TrueBlank.mzML"
ProjectDB::doAlignment() loaded 80000 segments	Aligner::doSegmentedAligment()samples=80
doSegmentedAligment: X0128-M004-01_Blank.mzML	corected=4916
doSegmentedAligment: X0128-M004-02_Blank.mzML	corected=9738
doSegmentedAligment: X0128-M004-03_Blank.mzML	corected=9731
doSegmentedAligment: X0128-M004-04_DeuteratedLipidStd.mzML	corected=9806
doSegmentedAligment: X0128-M004-05_std008A.mzML	corected=10262
doSegmentedAligment: X0128-M004-06_NegMTBE.mzML	corected=9936
doSegmentedAligment: X0128-M004-07_NegMOP.mzML	corected=9952
doSegmentedAligment: X0128-M004-08_MTBE1.mzML	corected=10424
doSegmentedAligment: X0128-M004-09_MOP1.mzML	corected=10420
doSegmentedAligment: X0128-M004-10_MTBE2.mzML	corected=10453
doSegmentedAligment: X0128-M004-11_MOP2.mzML	corected=10401
doSegmentedAligment: X0128-M004-12_MTBE3.mzML	corected=10387
doSegmentedAligment: X0128-M004-13_MOP3.mzML	corected=10378
doSegmentedAligment: X0128-M004-14_MTBE4.mzML	corected=10351
doSegmentedAligment: X0128-M004-15_MOP4.mzML	corected=10334
doSegmentedAligment: X0128-M004-16_MTBE5.mzML	corected=10405
doSegmentedAligment: X0128-M004-17_MOP5.mzML	corected=4186
doSegmentedAligment: X0128-M004-18_std008A.mzML	corected=10277
doSegmentedAligment: X0128-M004-19_DeuteratedLipidStd.mzML	corected=9934
doSegmentedAligment: X0128-M004-20_Blank.mzML	corected=9802
doSegmentedAligment: X0129-M004-01_TrueBlank.mzML	corected=10702
doSegmentedAligment: X0129-M004-02_TrueBlank.mzML	corected=9427
doSegmentedAligment: X0129-M004-03_std008A.mzML	corected=9926
doSegmentedAligment: X0129-M004-04_Blank.mzML	corected=9515
doSegmentedAligment: X0129-M004-05_LoadControl.mzML	corected=9672
doSegmentedAligment: X0129-M004-06_MTBE-W1-G.mzML	corected=9705
doSegmentedAligment: X0129-M004-07_MTBE-P1-G.mzML	corected=10119
doSegmentedAligment: X0129-M004-08_MTBE-W1-L.mzML	corected=9866
doSegmentedAligment: X0129-M004-09_MTBE-P1-L.mzML	corected=10282
doSegmentedAligment: X0129-M004-10_MTBE-W1-R.mzML	corected=9865
doSegmentedAligment: X0129-M004-11_MTBE-P1-R.mzML	corected=10289
doSegmentedAligment: X0129-M004-12_Folch-W1-G.mzML	corected=9888
doSegmentedAligment: X0129-M004-13_Folch-P1-G.mzML	corected=10287
doSegmentedAligment: X0129-M004-14_Folch-W1-L.mzML	corected=10045
doSegmentedAligment: X0129-M004-15_Folch-P1-L.mzML	corected=10444
doSegmentedAligment: X0129-M004-16_Folch-W1-R.mzML	corected=9953
doSegmentedAligment: X0129-M004-18_LoadControl.mzML	corected=9879
doSegmentedAligment: X0129-M004-19_MTBE-W2-G.mzML	corected=9889
doSegmentedAligment: X0129-M004-20_MTBE-P2-G.mzML	corected=10288
doSegmentedAligment: X0129-M004-21_MTBE-W2-L.mzML	corected=10071
doSegmentedAligment: X0129-M004-22_MTBE-P2-L.mzML	corected=10438
doSegmentedAligment: X0129-M004-23_MTBE-W2-R.mzML	corected=10022
doSegmentedAligment: X0129-M004-24_MTBE-P2-R.mzML	corected=10235
doSegmentedAligment: X0129-M004-25_Folch-W2-G.mzML	corected=9938
doSegmentedAligment: X0129-M004-26_Folch-P2-G.mzML	corected=10393
doSegmentedAligment: X0129-M004-27_Folch-W2-L.mzML	corected=10135
doSegmentedAligment: X0129-M004-28_Folch-P2-L.mzML	corected=10495
doSegmentedAligment: X0129-M004-29_Folch-W2-R.mzML	corected=10082
doSegmentedAligment: X0129-M004-30_Folch-P2-R.mzML	corected=10419
doSegmentedAligment: X0129-M004-31_LoadControl.mzML	corected=9924
doSegmentedAligment: X0129-M004-32_MTBE-W3-G.mzML	corected=9916
doSegmentedAligment: X0129-M004-33_MTBE-P3-G.mzML	corected=10396
doSegmentedAligment: X0129-M004-34_MTBE-W3-L.mzML	corected=10134
doSegmentedAligment: X0129-M004-35_MTBE-P3-L.mzML	corected=10471
doSegmentedAligment: X0129-M004-36_MTBE-W3-R.mzML	corected=10099
doSegmentedAligment: X0129-M004-37_MTBE-P3-R.mzML	corected=10442
doSegmentedAligment: X0129-M004-38_Folch-W3-G.mzML	corected=10062
doSegmentedAligment: X0129-M004-39_Folch-P3-G.mzML	corected=10506
doSegmentedAligment: X0129-M004-40_Folch-W3-L.mzML	corected=10216
doSegmentedAligment: X0129-M004-41_Folch-P3-L.mzML	corected=10582
doSegmentedAligment: X0129-M004-42_Folch-W3-R.mzML	corected=10157
doSegmentedAligment: X0129-M004-43_Folch-P3-R.mzML	corected=10557
doSegmentedAligment: X0129-M004-44_LoadControl.mzML	corected=9999
doSegmentedAligment: X0129-M004-45_MTBE-W4-G.mzML	corected=10124
doSegmentedAligment: X0129-M004-46_MTBE-P4-G.mzML	corected=10413
doSegmentedAligment: X0129-M004-47_MTBE-W4-L.mzML	corected=10186
doSegmentedAligment: X0129-M004-47a_TrueBlank.mzML	corected=9706
doSegmentedAligment: X0129-M004-48_MTBE-P4-L_191010104201.mzML	corected=9981
doSegmentedAligment: X0129-M004-49_MTBE-W4-R.mzML	corected=9338
doSegmentedAligment: X0129-M004-50_MTBE-P4-R.mzML	corected=10055
doSegmentedAligment: X0129-M004-51_Folch-W4-G.mzML	corected=9769
doSegmentedAligment: X0129-M004-52_Folch-P4-G.mzML	corected=10255
doSegmentedAligment: X0129-M004-53_Folch-W4-L.mzML	corected=9868
doSegmentedAligment: X0129-M004-54_Folch-P4-L.mzML	corected=10304
doSegmentedAligment: X0129-M004-55_Folch-W4-R.mzML	corected=9889
doSegmentedAligment: X0129-M004-56_Folch-P4-R.mzML	corected=4906
doSegmentedAligment: X0129-M004-57_LoadControl.mzML	corected=9786
doSegmentedAligment: X0129-M004-58_std008A.mzML	corected=10102
doSegmentedAligment: X0129-M004-59_Blank.mzML	corected=9741
doSegmentedAligment: X0129-M004-60_TrueBlank.mzML	corected=9840
Search Table Names:
entry= "peakdetector"
entry= "rumsDB"
End Search Table Names.
Created tables for search results.
Cleared loaded peak groups.
ProjectDB Read in 3198
Peakgroups count:  3198 

 EicWidget::computeEICs()
	computeEICs() pullEics().. msec= 119
Start groupCount= 110
Stop groupCount= 51
	groupPeaks() msec= 126
	computeEICs() Done.
 EicWidget::replot(PeakGroup* group ) group= 0x7fb6c70aa788
 EicWidget::setFocusLine(float rt)
addMS2Events()  found= 35
replotForced done msec= 141
 EicWidget::computeEICs()
	computeEICs() pullEics().. msec= 121
Start groupCount= 110
Stop groupCount= 51
	groupPeaks() msec= 128
	computeEICs() Done.
 EicWidget::replot(PeakGroup* group ) group= 0x7fb6c70aa788
 EicWidget::setFocusLine(float rt)
addMS2Events()  found= 35
replotForced done msec= 143
saveProjectSQLITE() "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-0129-M004A_merged_mzkitchen_v7_output_Mon_Oct_14_15-51-33_PDT_2019/X0128and9-M004-peakdetector2.mzrollDB" 

new project..
openning..  "/Users/tobiasmaile/Documents/Tobi_Experiments/X0128-0129_DataAnalysis_merged/X0128-0129-M004A_merged/X0128-0129-M004A_merged_mzkitchen_v7_output_Mon_Oct_14_15-51-33_PDT_2019/X0128and9-M004-peakdetector2.mzrollDB"
Already oppenned.. 
asssignSampleIdsX0128-M004-01_Blank.mzML 	0
asssignSampleIdsX0128-M004-02_Blank.mzML 	1
asssignSampleIdsX0128-M004-03_Blank.mzML 	2
asssignSampleIdsX0128-M004-04_DeuteratedLipidStd.mzML 	3
asssignSampleIdsX0128-M004-05_std008A.mzML 	4
asssignSampleIdsX0128-M004-06_NegMTBE.mzML 	5
asssignSampleIdsX0128-M004-07_NegMOP.mzML 	6
asssignSampleIdsX0128-M004-08_MTBE1.mzML 	7
asssignSampleIdsX0128-M004-09_MOP1.mzML 	8
asssignSampleIdsX0128-M004-10_MTBE2.mzML 	9
asssignSampleIdsX0128-M004-11_MOP2.mzML 	10
asssignSampleIdsX0128-M004-12_MTBE3.mzML 	11
asssignSampleIdsX0128-M004-13_MOP3.mzML 	12
asssignSampleIdsX0128-M004-14_MTBE4.mzML 	13
asssignSampleIdsX0128-M004-15_MOP4.mzML 	14
asssignSampleIdsX0128-M004-16_MTBE5.mzML 	15
asssignSampleIdsX0128-M004-17_MOP5.mzML 	16
asssignSampleIdsX0128-M004-18_std008A.mzML 	17
asssignSampleIdsX0128-M004-19_DeuteratedLipidStd.mzML 	18
asssignSampleIdsX0128-M004-20_Blank.mzML 	19
asssignSampleIdsX0129-M004-01_TrueBlank.mzML 	20
asssignSampleIdsX0129-M004-02_TrueBlank.mzML 	21
asssignSampleIdsX0129-M004-03_std008A.mzML 	22
asssignSampleIdsX0129-M004-04_Blank.mzML 	23
asssignSampleIdsX0129-M004-05_LoadControl.mzML 	24
asssignSampleIdsX0129-M004-06_MTBE-W1-G.mzML 	25
asssignSampleIdsX0129-M004-07_MTBE-P1-G.mzML 	26
asssignSampleIdsX0129-M004-08_MTBE-W1-L.mzML 	27
asssignSampleIdsX0129-M004-09_MTBE-P1-L.mzML 	28
asssignSampleIdsX0129-M004-10_MTBE-W1-R.mzML 	29
asssignSampleIdsX0129-M004-11_MTBE-P1-R.mzML 	30
asssignSampleIdsX0129-M004-12_Folch-W1-G.mzML 	31
asssignSampleIdsX0129-M004-13_Folch-P1-G.mzML 	32
asssignSampleIdsX0129-M004-14_Folch-W1-L.mzML 	33
asssignSampleIdsX0129-M004-15_Folch-P1-L.mzML 	34
asssignSampleIdsX0129-M004-16_Folch-W1-R.mzML 	35
asssignSampleIdsX0129-M004-18_LoadControl.mzML 	37
asssignSampleIdsX0129-M004-19_MTBE-W2-G.mzML 	38
asssignSampleIdsX0129-M004-20_MTBE-P2-G.mzML 	39
asssignSampleIdsX0129-M004-21_MTBE-W2-L.mzML 	40
asssignSampleIdsX0129-M004-22_MTBE-P2-L.mzML 	41
asssignSampleIdsX0129-M004-23_MTBE-W2-R.mzML 	42
asssignSampleIdsX0129-M004-24_MTBE-P2-R.mzML 	43
asssignSampleIdsX0129-M004-25_Folch-W2-G.mzML 	44
asssignSampleIdsX0129-M004-26_Folch-P2-G.mzML 	45
asssignSampleIdsX0129-M004-27_Folch-W2-L.mzML 	46
asssignSampleIdsX0129-M004-28_Folch-P2-L.mzML 	47
asssignSampleIdsX0129-M004-29_Folch-W2-R.mzML 	48
asssignSampleIdsX0129-M004-30_Folch-P2-R.mzML 	49
asssignSampleIdsX0129-M004-31_LoadControl.mzML 	50
asssignSampleIdsX0129-M004-32_MTBE-W3-G.mzML 	51
asssignSampleIdsX0129-M004-33_MTBE-P3-G.mzML 	52
asssignSampleIdsX0129-M004-34_MTBE-W3-L.mzML 	53
asssignSampleIdsX0129-M004-35_MTBE-P3-L.mzML 	54
asssignSampleIdsX0129-M004-36_MTBE-W3-R.mzML 	55
asssignSampleIdsX0129-M004-37_MTBE-P3-R.mzML 	56
asssignSampleIdsX0129-M004-38_Folch-W3-G.mzML 	57
asssignSampleIdsX0129-M004-39_Folch-P3-G.mzML 	58
asssignSampleIdsX0129-M004-40_Folch-W3-L.mzML 	59
asssignSampleIdsX0129-M004-41_Folch-P3-L.mzML 	60
asssignSampleIdsX0129-M004-42_Folch-W3-R.mzML 	61
asssignSampleIdsX0129-M004-43_Folch-P3-R.mzML 	62
asssignSampleIdsX0129-M004-44_LoadControl.mzML 	63
asssignSampleIdsX0129-M004-45_MTBE-W4-G.mzML 	64
asssignSampleIdsX0129-M004-46_MTBE-P4-G.mzML 	65
asssignSampleIdsX0129-M004-47_MTBE-W4-L.mzML 	66
asssignSampleIdsX0129-M004-47a_TrueBlank.mzML 	67
asssignSampleIdsX0129-M004-48_MTBE-P4-L_191010104201.mzML 	68
asssignSampleIdsX0129-M004-49_MTBE-W4-R.mzML 	69
asssignSampleIdsX0129-M004-50_MTBE-P4-R.mzML 	70
asssignSampleIdsX0129-M004-51_Folch-W4-G.mzML 	71
asssignSampleIdsX0129-M004-52_Folch-P4-G.mzML 	72
asssignSampleIdsX0129-M004-53_Folch-W4-L.mzML 	73
asssignSampleIdsX0129-M004-54_Folch-P4-L.mzML 	74
asssignSampleIdsX0129-M004-55_Folch-W4-R.mzML 	75
asssignSampleIdsX0129-M004-56_Folch-P4-R.mzML 	76
asssignSampleIdsX0129-M004-57_LoadControl.mzML 	77
asssignSampleIdsX0129-M004-58_std008A.mzML 	78
asssignSampleIdsX0129-M004-59_Blank.mzML 	79
asssignSampleIdsX0129-M004-60_TrueBlank.mzML 	80
ProjectDB::saveAlignment()
Saving alignment for sample: X0128-M004-01_Blank.mzML #scans=4916
Saving alignment for sample: X0128-M004-02_Blank.mzML #scans=9738
Saving alignment for sample: X0128-M004-03_Blank.mzML #scans=9731
Saving alignment for sample: X0128-M004-04_DeuteratedLipidStd.mzML #scans=9806
Saving alignment for sample: X0128-M004-05_std008A.mzML #scans=10262
Saving alignment for sample: X0128-M004-06_NegMTBE.mzML #scans=9936
Saving alignment for sample: X0128-M004-07_NegMOP.mzML #scans=9952
Saving alignment for sample: X0128-M004-08_MTBE1.mzML #scans=10424
Saving alignment for sample: X0128-M004-09_MOP1.mzML #scans=10420
Saving alignment for sample: X0128-M004-10_MTBE2.mzML #scans=10453
Saving alignment for sample: X0128-M004-11_MOP2.mzML #scans=10401
Saving alignment for sample: X0128-M004-12_MTBE3.mzML #scans=10387
Saving alignment for sample: X0128-M004-13_MOP3.mzML #scans=10378
Saving alignment for sample: X0128-M004-14_MTBE4.mzML #scans=10351
Saving alignment for sample: X0128-M004-15_MOP4.mzML #scans=10334
Saving alignment for sample: X0128-M004-16_MTBE5.mzML #scans=10405
Saving alignment for sample: X0128-M004-17_MOP5.mzML #scans=4186
Saving alignment for sample: X0128-M004-18_std008A.mzML #scans=10277
Saving alignment for sample: X0128-M004-19_DeuteratedLipidStd.mzML #scans=9934
Saving alignment for sample: X0128-M004-20_Blank.mzML #scans=9802
Saving alignment for sample: X0129-M004-01_TrueBlank.mzML #scans=10702
Saving alignment for sample: X0129-M004-02_TrueBlank.mzML #scans=9427
Saving alignment for sample: X0129-M004-03_std008A.mzML #scans=9926
Saving alignment for sample: X0129-M004-04_Blank.mzML #scans=9515
Saving alignment for sample: X0129-M004-05_LoadControl.mzML #scans=9672
Saving alignment for sample: X0129-M004-06_MTBE-W1-G.mzML #scans=9705
Saving alignment for sample: X0129-M004-07_MTBE-P1-G.mzML #scans=10119
Saving alignment for sample: X0129-M004-08_MTBE-W1-L.mzML #scans=9866
Saving alignment for sample: X0129-M004-09_MTBE-P1-L.mzML #scans=10282
Saving alignment for sample: X0129-M004-10_MTBE-W1-R.mzML #scans=9865
Saving alignment for sample: X0129-M004-11_MTBE-P1-R.mzML #scans=10289
Saving alignment for sample: X0129-M004-12_Folch-W1-G.mzML #scans=9888
Saving alignment for sample: X0129-M004-13_Folch-P1-G.mzML #scans=10287
Saving alignment for sample: X0129-M004-14_Folch-W1-L.mzML #scans=10045
Saving alignment for sample: X0129-M004-15_Folch-P1-L.mzML #scans=10444
Saving alignment for sample: X0129-M004-16_Folch-W1-R.mzML #scans=9953
Saving alignment for sample: X0129-M004-18_LoadControl.mzML #scans=9879
Saving alignment for sample: X0129-M004-19_MTBE-W2-G.mzML #scans=9889
Saving alignment for sample: X0129-M004-20_MTBE-P2-G.mzML #scans=10288
Saving alignment for sample: X0129-M004-21_MTBE-W2-L.mzML #scans=10071
Saving alignment for sample: X0129-M004-22_MTBE-P2-L.mzML #scans=10438
Saving alignment for sample: X0129-M004-23_MTBE-W2-R.mzML #scans=10022
Saving alignment for sample: X0129-M004-24_MTBE-P2-R.mzML #scans=10235
Saving alignment for sample: X0129-M004-25_Folch-W2-G.mzML #scans=9938
Saving alignment for sample: X0129-M004-26_Folch-P2-G.mzML #scans=10393
Saving alignment for sample: X0129-M004-27_Folch-W2-L.mzML #scans=10135
Saving alignment for sample: X0129-M004-28_Folch-P2-L.mzML #scans=10495
Saving alignment for sample: X0129-M004-29_Folch-W2-R.mzML #scans=10082
Saving alignment for sample: X0129-M004-30_Folch-P2-R.mzML #scans=10419
Saving alignment for sample: X0129-M004-31_LoadControl.mzML #scans=9924
Saving alignment for sample: X0129-M004-32_MTBE-W3-G.mzML #scans=9916
Saving alignment for sample: X0129-M004-33_MTBE-P3-G.mzML #scans=10396
Saving alignment for sample: X0129-M004-34_MTBE-W3-L.mzML #scans=10134
Saving alignment for sample: X0129-M004-35_MTBE-P3-L.mzML #scans=10471
Saving alignment for sample: X0129-M004-36_MTBE-W3-R.mzML #scans=10099
Saving alignment for sample: X0129-M004-37_MTBE-P3-R.mzML #scans=10442
Saving alignment for sample: X0129-M004-38_Folch-W3-G.mzML #scans=10062
Saving alignment for sample: X0129-M004-39_Folch-P3-G.mzML #scans=10506
Saving alignment for sample: X0129-M004-40_Folch-W3-L.mzML #scans=10216
Saving alignment for sample: X0129-M004-41_Folch-P3-L.mzML #scans=10582
Saving alignment for sample: X0129-M004-42_Folch-W3-R.mzML #scans=10157
Saving alignment for sample: X0129-M004-43_Folch-P3-R.mzML #scans=10557
Saving alignment for sample: X0129-M004-44_LoadControl.mzML #scans=9999
Saving alignment for sample: X0129-M004-45_MTBE-W4-G.mzML #scans=10124
Saving alignment for sample: X0129-M004-46_MTBE-P4-G.mzML #scans=10413
Saving alignment for sample: X0129-M004-47_MTBE-W4-L.mzML #scans=10186
Saving alignment for sample: X0129-M004-47a_TrueBlank.mzML #scans=9706
Saving alignment for sample: X0129-M004-48_MTBE-P4-L_191010104201.mzML #scans=9981
Saving alignment for sample: X0129-M004-49_MTBE-W4-R.mzML #scans=9338
Saving alignment for sample: X0129-M004-50_MTBE-P4-R.mzML #scans=10055
Saving alignment for sample: X0129-M004-51_Folch-W4-G.mzML #scans=9769
Saving alignment for sample: X0129-M004-52_Folch-P4-G.mzML #scans=10255
Saving alignment for sample: X0129-M004-53_Folch-W4-L.mzML #scans=9868
Saving alignment for sample: X0129-M004-54_Folch-P4-L.mzML #scans=10304
Saving alignment for sample: X0129-M004-55_Folch-W4-R.mzML #scans=9889
Saving alignment for sample: X0129-M004-56_Folch-P4-R.mzML #scans=4906
Saving alignment for sample: X0129-M004-57_LoadControl.mzML #scans=9786
Saving alignment for sample: X0129-M004-58_std008A.mzML #scans=10102
Saving alignment for sample: X0129-M004-59_Blank.mzML #scans=9741
Saving alignment for sample: X0129-M004-60_TrueBlank.mzML #scans=9840
Segmentation fault: 11
logout
Saving session...
...copying shared history...
...saving history...truncating history files...
...completed.

[Process completed]

Incorporating AccuCor to MAVEN

We have some R codes to do isotope natural abundance correction, named AccuCor. AccuCor takes the output file of MAVEN and gives corrected data spreadsheet. We want to have AccuCor incorporated to MAVEN so that the data export and correction can be done simultaneously. The AccuCor codes are available at https://github.com/XiaoyangSu/Isotope-Natural-Abundance-Correction. The paper describing AccuCor is https://www.ncbi.nlm.nih.gov/pubmed/28471646.

DI data spectral deconvolution algorithms #1

Start implementing spectral deconvolution algorithms.

For example, an "all unshared" approach might be:

Determine which fragments are "unshared" in a spectrum, and compare to the theoretical.
Do this for all compounds, and report a ratio.

Options dialog sometimes showing empty

Inexplicably, sometimes the dialog shows as empty. Seems to only happen when multiple samples are loaded.

Separate matching and filtering logic in background_peaks_update

background_peaks_update.cpp has a method, matchFragmentation(Peakgroup*), which matches the peakgroup a database and performs some filtering of results.

some filtering of results is performed downstream.

Instead, the method should simply return matches, and all filtering should be handled downstream.

Opening large library files crashes mdworker background process

When I open mutliple small lipid libraries or few large ones, some background processes crash occasionally. mdworker is one of them:

Process: mdworker_shared [6431]
Path: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Support/mdworker_shared
Identifier: mdworker_shared
Version: 1191.57
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: mdworker_shared [6431]
User ID: 501

Date/Time: 2019-09-09 16:56:22.750 -0700
OS Version: Mac OS X 10.14.6 (18G95)
Report Version: 12
Bridge OS Version: 3.6 (16P6571)
Anonymous UUID: 4AAD1764-F878-B5EE-F93C-F4FE82B180A6

Sleep/Wake UUID: AF18C142-5509-419E-9313-A33E270983DB

Time Awake Since Boot: 92000 seconds
Time Since Wake: 15000 seconds

System Integrity Protection: enabled

Crashed Thread: 1

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
pre-plugin fstype:dfsfuse_DFS fsflag:101A flags:240000005E diag:0 isXCode:0 uti:dyn.ah62d4rv4ge80465u plugin:internalPlainTextImporter - find suspect file using: sudo mdutil -t 24150
abort() called
mdworker_shared(6431,0x700001092000) malloc: *** error for object 0x7fcd78108000: pointer being freed was not allocated

Application Specific Signatures:
pre-plugin uti:dyn.ah62d4rv4ge80465u plugin:internalPlainTextImporter uuid:(null)

Thread 0:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7058f22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7058f76c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff445021ee __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff4450175c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff44500ebe CFRunLoopRunSpecific + 455
5 com.apple.CoreFoundation 0x00007fff44500cd2 CFRunLoopRun + 40
6 mdworker_shared 0x0000000106a2a7e2 0x106a21000 + 38882
7 libdyld.dylib 0x00007fff7045a3d5 start + 1

Thread 1 Crashed:
0 libsystem_kernel.dylib 0x00007fff705952c6 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff70650bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff704ff6a6 abort + 127
3 libsystem_malloc.dylib 0x00007fff7060e077 malloc_vreport + 545
4 libsystem_malloc.dylib 0x00007fff7060de38 malloc_report + 151
5 mdworker_shared 0x0000000106a575e7 0x106a21000 + 222695
6 mdworker_shared 0x0000000106a58647 0x106a21000 + 226887
7 mdworker_shared 0x0000000106a267f4 0x106a21000 + 22516
8 mdworker_shared 0x0000000106a27336 0x106a21000 + 25398
9 mdworker_shared 0x0000000106a2cf67 0x106a21000 + 48999
10 libsystem_pthread.dylib 0x00007fff7064e2eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff70651249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff7064d40d thread_start + 13

Thread 2:
0 libsystem_kernel.dylib 0x00007fff7058f22a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7058f76c mach_msg + 60
2 mdworker_shared 0x0000000106a3da84 0x106a21000 + 117380
3 libsystem_pthread.dylib 0x00007fff7064e2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff70651249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff7064d40d thread_start + 13

Thread 3:
0 libsystem_pthread.dylib 0x00007fff7064d3f0 start_wqthread + 0

Thread 1 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000700001092000 rcx: 0x000070000108fab8 rdx: 0x0000000000000000
rdi: 0x0000000000005107 rsi: 0x0000000000000006 rbp: 0x000070000108faf0 rsp: 0x000070000108fab8
r8: 0x0000000000000000 r9: 0x000070000108fa10 r10: 0x0000000000000000 r11: 0x0000000000000206
r12: 0x0000000000005107 r13: 0x0000000106bb7000 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff705952c6 rfl: 0x0000000000000206 cr2: 0x00007fffa6ce7188

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:
0x106a21000 - 0x106a70fff mdworker_shared (1191.57) <724FCF7F-51EE-395E-89A8-F4A5DCC94654> /System/Library/Frameworks/CoreServices.framework/Frameworks/Metadata.framework/Versions/A/Support/mdworker_shared
0x10d338000 - 0x10d3a270f dyld (655.1.1) /usr/lib/dyld
0x7fff408aa000 - 0x7fff408aafff com.apple.Accelerate (1.11 - Accelerate 1.11) <762942CB-CFC9-3A0C-9645-A56523A06426> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff408c2000 - 0x7fff40f5bfef com.apple.vImage (8.1 - ???) <53FA3611-894E-3158-A654-FBD2F70998FE> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff40f5c000 - 0x7fff411d5ff3 libBLAS.dylib (1243.200.4) <417CA0FC-B6CB-3FB3-ACBC-8914E3F62D20> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff411d6000 - 0x7fff41248ffb libBNNS.dylib (38.250.1) <538D12A2-9B9D-3E22-9896-F90F6E69C06E> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib
0x7fff41249000 - 0x7fff415f2ff3 libLAPACK.dylib (1243.200.4) <92175DF4-863A-3780-909A-A3E5C410F2E9> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x7fff415f3000 - 0x7fff41608feb libLinearAlgebra.dylib (1243.200.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff41609000 - 0x7fff4160eff3 libQuadrature.dylib (3.200.2) <1BAE7E22-2862-379F-B334-A3756067730F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib
0x7fff4160f000 - 0x7fff4168bff3 libSparse.dylib (79.200.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib
0x7fff4168c000 - 0x7fff4169ffe3 libSparseBLAS.dylib (1243.200.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib
0x7fff416a0000 - 0x7fff41887ff7 libvDSP.dylib (671.250.4) <7B110627-A9C1-3FB7-A077-0C7741BA25D8> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x7fff41888000 - 0x7fff4193bff7 libvMisc.dylib (671.250.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x7fff4193c000 - 0x7fff4193cfff com.apple.Accelerate.vecLib (3.11 - vecLib 3.11) <74288115-EF61-30B6-843F-0593B31D4929> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff41ade000 - 0x7fff42893ffb com.apple.AppKit (6.9 - 1671.60.107) <2F7E5984-E89A-3451-A3DF-FAAA509CF884> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff428e5000 - 0x7fff428e5fff com.apple.ApplicationServices (50.1 - 50.1) <84097DEB-E2FC-3901-8DD7-A670EA2274E0> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff428e6000 - 0x7fff42951fff com.apple.ApplicationServices.ATS (377 - 453.11.2.2) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x7fff429ea000 - 0x7fff42b01fff libFontParser.dylib (228.6.2.3) <3602D55B-3B9E-3B3A-A814-08C1244A8AE4> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
0x7fff42b02000 - 0x7fff42b44fff libFontRegistry.dylib (228.12.2.3) <2A56347B-2809-3407-A8B4-2AB88E484062> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
0x7fff42c35000 - 0x7fff42c39ff3 com.apple.ColorSyncLegacy (4.13.0 - 1) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSyncLegacy.framework/Versions/A/ColorSyncLegacy
0x7fff42cd4000 - 0x7fff42d26ff7 com.apple.HIServices (1.22 - 628) <2BE461FF-80B9-30D3-A574-AED5724B1C1B> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x7fff42d27000 - 0x7fff42d36fff com.apple.LangAnalysis (1.7.0 - 1.7.0) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff42d37000 - 0x7fff42d80ff7 com.apple.print.framework.PrintCore (14.2 - 503.8) <57C2FE32-0E74-3079-B626-C2D52F2D2717> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x7fff42d81000 - 0x7fff42dbaff7 com.apple.QD (3.12 - 407.2) <28C7D39F-59C9-3314-BECC-67045487229C> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x7fff42dbb000 - 0x7fff42dc7fff com.apple.speech.synthesis.framework (8.1.3 - 8.1.3) <5E7B9BD4-122B-3012-A044-3259C97E7509> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x7fff42dc8000 - 0x7fff4303fff7 com.apple.audio.toolbox.AudioToolbox (1.14 - 1.14) <04F482F1-E1C1-3955-8A6C-8AA152AA06F3> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x7fff43041000 - 0x7fff43041fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff4339a000 - 0x7fff4373bfff com.apple.CFNetwork (978.0.7 - 978.0.7) /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x7fff43750000 - 0x7fff43750fff com.apple.Carbon (158 - 158) <56AD06AA-7BB4-3F0B-AEF7-9768D0BC1C98> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff43751000 - 0x7fff43754ffb com.apple.CommonPanels (1.2.6 - 98) <1CD6D56D-8EC7-3528-8CBC-FC69533519B5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff43755000 - 0x7fff43a4cfff com.apple.HIToolbox (2.1.1 - 918.7) <13F69D4C-D19F-3E09-9231-1978D783A556> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff43a4d000 - 0x7fff43a50ff3 com.apple.help (1.3.8 - 66) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff43a51000 - 0x7fff43a56ff7 com.apple.ImageCapture (9.0 - 1534.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff43a57000 - 0x7fff43aecff3 com.apple.ink.framework (10.9 - 225) <7C7E9483-2E91-3DD3-B1E0-C238F42CA0DD> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff43aed000 - 0x7fff43b05ff7 com.apple.openscripting (1.7 - 179.1) <9B8C1ECC-5864-3E21-9149-863E884EA25C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff43b25000 - 0x7fff43b26ff7 com.apple.print.framework.Print (14.2 - 267.4) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff43b27000 - 0x7fff43b29ff7 com.apple.securityhi (9.0 - 55006) <05717F77-7A7B-37E6-AB3E-03F063E9095B> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff43b2a000 - 0x7fff43b30ff7 com.apple.speech.recognition.framework (6.0.3 - 6.0.3) <3CC050FB-EBCB-3087-8EA5-F378C8F99217> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x7fff43c60000 - 0x7fff43dafff7 com.apple.ColorSync (4.13.0 - 3345.6) <31648BB6-7239-3D0E-81B1-BCF51FEF557F> /System/Library/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff43f3b000 - 0x7fff43fc1fff com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <1E8E64E6-0E58-375A-97F7-07CB4EE181AC> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x7fff44025000 - 0x7fff4404fffb com.apple.CoreBluetooth (1.0 - 1) /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth
0x7fff44050000 - 0x7fff443d5fef com.apple.CoreData (120 - 866.6) <132CB39B-8D58-30FA-B8AD-49BFFF34B293> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x7fff443d6000 - 0x7fff444c6ff7 com.apple.CoreDisplay (101.3 - 110.18) <0EB2A997-FCAD-3D17-B140-9829961E5327> /System/Library/Frameworks/CoreDisplay.framework/Versions/A/CoreDisplay
0x7fff444c7000 - 0x7fff4490bfe7 com.apple.CoreFoundation (6.9 - 1575.19) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff4490d000 - 0x7fff44f9cfff com.apple.CoreGraphics (2.0 - 1265.9) /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff44f9e000 - 0x7fff452befff com.apple.CoreImage (14.4.0 - 750.0.140) <11026E39-D2FF-3CF6-8ACE-7BA293F9853E> /System/Library/Frameworks/CoreImage.framework/Versions/A/CoreImage
0x7fff4571c000 - 0x7fff4571cfff com.apple.CoreServices (946 - 946) <6EC9F377-EBD8-3358-92D1-6586F6F1E8E9> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x7fff4571d000 - 0x7fff45799ff7 com.apple.AE (773 - 773) <55AE7C9E-27C3-30E9-A047-3B92A6FD53B4> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x7fff4579a000 - 0x7fff45a71fff com.apple.CoreServices.CarbonCore (1178.33 - 1178.33) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff45a72000 - 0x7fff45abaff7 com.apple.DictionaryServices (1.2 - 284.16.4) <746EB200-DC51-30AE-9CBC-608A7B4CC8DA> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x7fff45abb000 - 0x7fff45ac3ffb com.apple.CoreServices.FSEvents (1239.200.12 - 1239.200.12) <8406D379-8D33-3611-861B-7ABD26DB50D2> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff45ac4000 - 0x7fff45c75ff7 com.apple.LaunchServices (946 - 946) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x7fff45c76000 - 0x7fff45d14ff7 com.apple.Metadata (10.7.0 - 1191.57) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x7fff45d15000 - 0x7fff45d5fff7 com.apple.CoreServices.OSServices (946 - 946) <20C4EEF8-D5AC-39A0-9B4A-78F88E3EFBCC> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x7fff45d60000 - 0x7fff45dc7ff7 com.apple.SearchKit (1.4.0 - 1.4.0) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x7fff45dc8000 - 0x7fff45de9ff3 com.apple.coreservices.SharedFileList (71.28 - 71.28) <487A8464-729E-305A-B5D1-E3FE8EB9CFC5> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
0x7fff45dea000 - 0x7fff45e49ff3 com.apple.CoreSpotlight (1.0 - 231.48) <5EB621B3-AAF4-3110-8C34-EB4D64BE7412> /System/Library/Frameworks/CoreSpotlight.framework/Versions/A/CoreSpotlight
0x7fff460f4000 - 0x7fff46256ff3 com.apple.CoreText (352.0 - 584.26.3.2) <59919B0C-CBD5-3877-8D6F-D6048F1E5F42> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
0x7fff46257000 - 0x7fff46297ff3 com.apple.CoreVideo (1.8 - 281.4) <10CF8E52-07E3-382B-8091-2CEEEFFA69B4> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x7fff46298000 - 0x7fff46327fff com.apple.framework.CoreWLAN (13.0 - 1375.2) /System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN
0x7fff464aa000 - 0x7fff46558fff com.apple.DiscRecording (9.0.3 - 9030.4.5) /System/Library/Frameworks/DiscRecording.framework/Versions/A/DiscRecording
0x7fff4657e000 - 0x7fff46583ffb com.apple.DiskArbitration (2.7 - 2.7) /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x7fff46749000 - 0x7fff46af6ffb com.apple.Foundation (6.9 - 1575.19) /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff46b65000 - 0x7fff46b94ffb com.apple.GSS (4.0 - 2.0) /System/Library/Frameworks/GSS.framework/Versions/A/GSS
0x7fff46c94000 - 0x7fff46d9efff com.apple.Bluetooth (6.0.14 - 6.0.14d3) /System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth
0x7fff46e01000 - 0x7fff46e90fff com.apple.framework.IOKit (2.0.2 - 1483.260.4) <8A90F547-86EF-3DFB-92FE-0E2C0376DD84> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff46e92000 - 0x7fff46ea1ffb com.apple.IOSurface (255.6.1 - 255.6.1) <85F85EBB-EA59-3A8B-B3EB-7C20F3CC77AE> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
0x7fff46ef5000 - 0x7fff47080fef com.apple.ImageIO.framework (3.3.0 - 1850.2) <75E46A31-D87D-35CE-86A4-96A50971FDB2> /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x7fff47081000 - 0x7fff47085ffb libGIF.dylib (1850.2) <4774EBDF-583B-3DDD-A0E1-9F427CB6A074> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x7fff47086000 - 0x7fff47162fef libJP2.dylib (1850.2) <697BB77F-A682-339F-8659-35432962432D> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
0x7fff47163000 - 0x7fff47188feb libJPEG.dylib (1850.2) <171A8AC4-AADA-376F-9F2C-B9C978DB1007> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x7fff4744b000 - 0x7fff47471feb libPng.dylib (1850.2) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff47472000 - 0x7fff47474ffb libRadiance.dylib (1850.2) <56907025-D5CE-3A9E-ACCB-A376C2599853> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x7fff47475000 - 0x7fff474c2fe7 libTIFF.dylib (1850.2) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x7fff48635000 - 0x7fff4864efff com.apple.Kerberos (3.0 - 1) /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff4906a000 - 0x7fff49112ff7 com.apple.Metal (162.2 - 162.2) /System/Library/Frameworks/Metal.framework/Versions/A/Metal
0x7fff4912e000 - 0x7fff4914dff7 com.apple.MetalPerformanceShaders.MPSCore (1.0 - 1) <44CE8362-E972-3697-AD6F-15BC863BAEB8> /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSCore.framework/Versions/A/MPSCore
0x7fff4914e000 - 0x7fff491cafe7 com.apple.MetalPerformanceShaders.MPSImage (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSImage.framework/Versions/A/MPSImage
0x7fff491cb000 - 0x7fff491f2fff com.apple.MetalPerformanceShaders.MPSMatrix (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSMatrix.framework/Versions/A/MPSMatrix
0x7fff491f3000 - 0x7fff4931eff7 com.apple.MetalPerformanceShaders.MPSNeuralNetwork (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSNeuralNetwork.framework/Versions/A/MPSNeuralNetwork
0x7fff4931f000 - 0x7fff49339fff com.apple.MetalPerformanceShaders.MPSRayIntersector (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSRayIntersector.framework/Versions/A/MPSRayIntersector
0x7fff4933a000 - 0x7fff4933bff7 com.apple.MetalPerformanceShaders.MetalPerformanceShaders (1.0 - 1) <69F14BCF-C5C5-3BF8-9C31-8F87D2D6130A> /System/Library/Frameworks/MetalPerformanceShaders.framework/Versions/A/MetalPerformanceShaders
0x7fff4a132000 - 0x7fff4a13eff7 com.apple.NetFS (6.0 - 4.0) /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
0x7fff4cbdc000 - 0x7fff4cc33ff7 com.apple.opencl (2.15.3 - 2.15.3) <056BAD8A-23BC-3F74-9E2C-3AC81E7DEA5A> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff4cc34000 - 0x7fff4cc4fff7 com.apple.CFOpenDirectory (10.14 - 207.200.4) /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
0x7fff4cc50000 - 0x7fff4cc5bffb com.apple.OpenDirectory (10.14 - 207.200.4) /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
0x7fff4d5ab000 - 0x7fff4d5adfff libCVMSPluginSupport.dylib (17.7.3) <8E051EA7-55B6-3DF1-9821-72C391DE953B> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
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0x7fff6d676000 - 0x7fff6d683fff libbz2.1.0.dylib (38.200.3) <272953A1-8D36-329B-BDDB-E887B347710F> /usr/lib/libbz2.1.0.dylib
0x7fff6d684000 - 0x7fff6d6d7ff7 libc++.1.dylib (400.9.4) <9A60A190-6C34-339F-BB3D-AACE942009A4> /usr/lib/libc++.1.dylib
0x7fff6d6d8000 - 0x7fff6d6edff7 libc++abi.dylib (400.17) <38C09CED-9090-3719-90F3-04A2749F5428> /usr/lib/libc++abi.dylib
0x7fff6d6ee000 - 0x7fff6d6eeff3 libcharset.1.dylib (51.200.6) <2A27E064-314C-359C-93FC-8A9B06206174> /usr/lib/libcharset.1.dylib
0x7fff6d6ef000 - 0x7fff6d6ffffb libcmph.dylib (6.15.1) <9C52B2FE-179F-32AC-B87E-2AFC49ABF817> /usr/lib/libcmph.dylib
0x7fff6d700000 - 0x7fff6d718ffb libcompression.dylib (52.250.2) <7F4BB18C-1FB4-3825-8D8B-6E6B168774C6> /usr/lib/libcompression.dylib
0x7fff6d98d000 - 0x7fff6d9a3fff libcoretls.dylib (155.220.1) <4C64BE3E-41E3-3020-8BB7-07E90C0C861C> /usr/lib/libcoretls.dylib
0x7fff6d9a4000 - 0x7fff6d9a5ff3 libcoretls_cfhelpers.dylib (155.220.1) <0959B3E9-6643-3589-8BB3-21D52CDF0EF1> /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6de3e000 - 0x7fff6de49ff7 libcsfde.dylib (546.50.1) <7BAF8FCF-33A1-3C7C-8FEB-2020C8ED6063> /usr/lib/libcsfde.dylib
0x7fff6de51000 - 0x7fff6dea7ff3 libcups.2.dylib (462.12) <095619DC-9233-3937-9E50-5F10D917A40D> /usr/lib/libcups.2.dylib
0x7fff6dfdb000 - 0x7fff6dfdbfff libenergytrace.dylib (17.200.1) <80BB567A-FD18-3497-BF97-353F57D98CDD> /usr/lib/libenergytrace.dylib
0x7fff6e00d000 - 0x7fff6e012ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff6e013000 - 0x7fff6e018ff7 libheimdal-asn1.dylib (520.270.1) <73F60D6F-76F8-35EF-9C86-9A81225EE4BE> /usr/lib/libheimdal-asn1.dylib
0x7fff6e043000 - 0x7fff6e133fff libiconv.2.dylib (51.200.6) <2047C9B7-3F74-3A95-810D-2ED8F0475A99> /usr/lib/libiconv.2.dylib
0x7fff6e134000 - 0x7fff6e395ffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib
0x7fff6e3e2000 - 0x7fff6e3e3fff liblangid.dylib (128.15.1) <22D05C4F-769B-3075-ABCF-44A0EBACE028> /usr/lib/liblangid.dylib
0x7fff6e3e4000 - 0x7fff6e3fcff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff6e414000 - 0x7fff6e4b8ff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff6e4b9000 - 0x7fff6e6bdfff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff6e895000 - 0x7fff6ebe6ff7 libnetwork.dylib (1229.250.15) <72C7E9E3-B2BE-3300-BE1B-64606222022C> /usr/lib/libnetwork.dylib
0x7fff6ec78000 - 0x7fff6f3fdfdf libobjc.A.dylib (756.2) <7C312627-43CB-3234-9324-4DEA92D59F50> /usr/lib/libobjc.A.dylib
0x7fff6f40f000 - 0x7fff6f413ffb libpam.2.dylib (22.200.1) <586CF87F-349C-393D-AEEB-FB75F94A5EB7> /usr/lib/libpam.2.dylib
0x7fff6f416000 - 0x7fff6f44bfff libpcap.A.dylib (79.250.1) /usr/lib/libpcap.A.dylib
0x7fff6f564000 - 0x7fff6f57cffb libresolv.9.dylib (65.200.2) <893142A5-F153-3437-A22D-407EE542B5C5> /usr/lib/libresolv.9.dylib
0x7fff6f57e000 - 0x7fff6f5b9ff3 libsandbox.1.dylib (851.270.1) <04B924EF-2385-34DF-807E-93AAD9EF3AAB> /usr/lib/libsandbox.1.dylib
0x7fff6f5cf000 - 0x7fff6f7acfff libsqlite3.dylib (274.26) <6404BA3B-BCA4-301F-B2FE-8776105A2AA3> /usr/lib/libsqlite3.dylib
0x7fff6f9c5000 - 0x7fff6f9c8ff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff6f9c9000 - 0x7fff6f9d6fff libxar.1.dylib (417.1) <39CCF46B-C81A-34B1-92A1-58C4E5DA846E> /usr/lib/libxar.1.dylib
0x7fff6f9db000 - 0x7fff6fabdff3 libxml2.2.dylib (32.10) /usr/lib/libxml2.2.dylib
0x7fff6fabe000 - 0x7fff6fae6ff3 libxslt.1.dylib (16.5) /usr/lib/libxslt.1.dylib
0x7fff6fae7000 - 0x7fff6faf9ff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff702dd000 - 0x7fff702e1ff3 libcache.dylib (81) <1987D1E1-DB11-3291-B12A-EBD55848E02D> /usr/lib/system/libcache.dylib
0x7fff702e2000 - 0x7fff702ecff3 libcommonCrypto.dylib (60118.250.2) <1765BB6E-6784-3653-B16B-CB839721DC9A> /usr/lib/system/libcommonCrypto.dylib
0x7fff702ed000 - 0x7fff702f4ff7 libcompiler_rt.dylib (63.4) <5212BA7B-B7EA-37B4-AF6E-AC4F507EDFB8> /usr/lib/system/libcompiler_rt.dylib
0x7fff702f5000 - 0x7fff702feff7 libcopyfile.dylib (146.250.1) <98CD00CD-9B91-3B5C-A9DB-842638050FA8> /usr/lib/system/libcopyfile.dylib
0x7fff702ff000 - 0x7fff70383fc3 libcorecrypto.dylib (602.260.2) <01464D24-570C-3B83-9D18-467769E0FCDD> /usr/lib/system/libcorecrypto.dylib
0x7fff7040a000 - 0x7fff70443ff7 libdispatch.dylib (1008.270.1) <97273678-E94C-3C8C-89F6-2E2020F4B43B> /usr/lib/system/libdispatch.dylib
0x7fff70444000 - 0x7fff70470ff7 libdyld.dylib (655.1.1) <002418CC-AD11-3D10-865B-015591D24E6C> /usr/lib/system/libdyld.dylib
0x7fff70471000 - 0x7fff70471ffb libkeymgr.dylib (30) <0D0F9CA2-8D5A-3273-8723-59987B5827F2> /usr/lib/system/libkeymgr.dylib
0x7fff70472000 - 0x7fff7047eff3 libkxld.dylib (4903.271.2) /usr/lib/system/libkxld.dylib
0x7fff7047f000 - 0x7fff7047fff7 liblaunch.dylib (1336.261.2) <2B07E27E-D404-3E98-9D28-BCA641E5C479> /usr/lib/system/liblaunch.dylib
0x7fff70480000 - 0x7fff70485fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff70486000 - 0x7fff70488ffb libquarantine.dylib (86.220.1) <6D0BC770-7348-3608-9254-F7FFBD347634> /usr/lib/system/libquarantine.dylib
0x7fff70489000 - 0x7fff7048aff7 libremovefile.dylib (45.200.2) <9FBEB2FF-EEBE-31BC-BCFC-C71F8D0E99B6> /usr/lib/system/libremovefile.dylib
0x7fff7048b000 - 0x7fff704a2ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff704a3000 - 0x7fff704a3ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff704a4000 - 0x7fff7052bfff libsystem_c.dylib (1272.250.1) <7EDACF78-2FA3-35B8-B051-D70475A35117> /usr/lib/system/libsystem_c.dylib
0x7fff7052c000 - 0x7fff7052fffb libsystem_configuration.dylib (963.270.3) <2B4A836D-68A4-33E6-8D48-CD4486B03387> /usr/lib/system/libsystem_configuration.dylib
0x7fff70530000 - 0x7fff70533ff7 libsystem_coreservices.dylib (66) <719F75A4-74C5-3BA6-A09E-0C5A3E5889D7> /usr/lib/system/libsystem_coreservices.dylib
0x7fff70534000 - 0x7fff7053afff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff7053b000 - 0x7fff70541ff7 libsystem_dnssd.dylib (878.270.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff70542000 - 0x7fff7058dffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff7058e000 - 0x7fff705b6ff7 libsystem_kernel.dylib (4903.271.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff705b7000 - 0x7fff70602ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff70603000 - 0x7fff7062dfff libsystem_malloc.dylib (166.270.1) <011F3AD0-8E6A-3A89-AE64-6E5F6840F30A> /usr/lib/system/libsystem_malloc.dylib
0x7fff7062e000 - 0x7fff70638ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff70639000 - 0x7fff70640fff libsystem_notify.dylib (172.200.21) <145B5CFC-CF73-33CE-BD3D-E8DDE268FFDE> /usr/lib/system/libsystem_notify.dylib
0x7fff70641000 - 0x7fff7064afef libsystem_platform.dylib (177.270.1) <9D1FE5E4-EB7D-3B3F-A8D1-A96D9CF1348C> /usr/lib/system/libsystem_platform.dylib
0x7fff7064b000 - 0x7fff70655ff7 libsystem_pthread.dylib (330.250.2) <2D5C08FF-484F-3D59-9132-CE1DCB3F76D7> /usr/lib/system/libsystem_pthread.dylib
0x7fff70656000 - 0x7fff70659ff7 libsystem_sandbox.dylib (851.270.1) <9494594B-5199-3186-82AB-5FF8BED6EE16> /usr/lib/system/libsystem_sandbox.dylib
0x7fff7065a000 - 0x7fff7065cff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff7065d000 - 0x7fff70664ff3 libsystem_symptoms.dylib (820.267.1) <03F1C2DD-0F5A-3D9D-88F6-B26C0F94EB52> /usr/lib/system/libsystem_symptoms.dylib
0x7fff70665000 - 0x7fff7067afff libsystem_trace.dylib (906.260.1) /usr/lib/system/libsystem_trace.dylib
0x7fff7067c000 - 0x7fff70681ffb libunwind.dylib (35.4) <24A97A67-F017-3CFC-B0D0-6BD0224B1336> /usr/lib/system/libunwind.dylib
0x7fff70682000 - 0x7fff706b1fff libxpc.dylib (1336.261.2) <7DEE2300-6D8E-3C00-9C63-E3E80D56B0C4> /usr/lib/system/libxpc.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 15
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 115849
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=376.0M resident=0K(0%) swapped_out_or_unallocated=376.0M(100%)
Writable regions: Total=1.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.6G(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 256K 1
Dispatch continuations 24.0M 1
Kernel Alloc Once 8K 1
MALLOC 372.1M 33
MALLOC guard page 24K 5
MALLOC_MEDIUM (reserved) 1.2G 12 reserved VM address space (unallocated)
STACK GUARD 56.0M 4
Stack 9752K 4
VM_ALLOCATE 12K 3
__DATA 24.9M 258
__FONT_DATA 4K 1
__LINKEDIT 222.4M 3
__TEXT 153.6M 256
__UNICODE 564K 1
mapped file 9112K 3
shared memory 2736K 7
=========== ======= =======
TOTAL 2.1G 593
TOTAL, minus reserved VM space 875.0M 593

Model: MacBookPro15,1, BootROM 220.270.99.0.0 (iBridge: 16.16.6571.0.0,0), 6 processors, Intel Core i7, 2.6 GHz, 32 GB, SMC
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AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Mar 28 2019 19:17:52 version 9.137.9.0.32.6.34 FWID 01-36f56c94
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USB Device: iBridge
Thunderbolt Bus: MacBook Pro, Apple Inc., 42.1
Thunderbolt Bus: MacBook Pro, Apple Inc., 42.1

Maven crashes after deleting lines in bookmarks tab

Bookmarks seem to have an issue when deleting lines:

Shift-clicking mutliple lines and deleting them results in not all lines being deleted. Some remain highlighted.

After deleting single lines, sometimes Maven crashes without having saved (continuous saving seems to be off).

Crash on peak detection in 8.0.18

Load ElucidaTestCase example dataset and run peak detection with "Must Have Ms2" crashes the program.

Here is a trace from lldb

2019-06-18 12:55:20.107835-0700 Maven[10490:3944232] BackgroundPeakUpdate:processMassSlices()
#algorithmD2810
2019-06-18 12:55:20.131595-0700 Maven[10490:3944232] BackgroundPeakUpdate::processSlices(vector<mzSlice*>&slices, string setName)
2019-06-18 12:55:20.131645-0700 Maven[10490:3944232] Processing slices: setName= allslices  slices= 2810
Process 10490 stopped
* thread #17, name = 'BackgroundPeakUpdate', stop reason = EXC_BAD_ACCESS (code=1, address=0xa4)
    frame #0: 0x0000000100052b81 Maven`BackgroundPeakUpdate::processSlices(std::__1::vector<mzSlice*, std::__1::allocator<mzSlice*> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >) + 1617
Maven`BackgroundPeakUpdate::processSlices:
->  0x100052b81 <+1617>: movss  0xa4, %xmm0               ; xmm0 = mem[0],zero,zero,zero
    0x100052b8a <+1626>: ucomiss 0x15d963(%rip), %xmm0
    0x100052b91 <+1633>: jne    0x100052b95               ; <+1637>
    0x100052b93 <+1635>: jnp    0x100052baa               ; <+1658

MS2 Number of matches filter not respected

The "Match at Least X Peaks" filter does not appear to be respected.

Adding novel compound to (extra) library for validation.

Sometimes compounds are detected for which no in-house library entry exists and/or no MS2 is available online or just experimental MS2 are available.
E.g. putative hit on Phenylsulfate, for which a matching experimental MS2 exists on HMDB, but a standard would be needed for validation (see screenshot):

It would be great to have a save function for clean MS2s found in Maven where the data would be saved in a central "experimental library" from which we can pull data for validation of new compounds.

Unexpected slowdowns in 8.1.0 as compared to 8.0.12

Probably b/c of peak grouping in EIC widget, with the new peakgroups algorithm B being very slow.

May want to adjust thresholds / turn this off, or put in a background thread.

This is a bigger issue when there are a lot of samples, owing to the O(N*N) complexity of the dissimilarities

Fix stochasticity in peakdetector

Work is actually done on maven_core, on branch peakdetector/algorithmE.

Read summary_attributes field of msp file, allow for designation of a bookmark to summary attribute

Designed primarily for reading msp library files from mzkit. The idea is that a bookmark might be adjusted to a lower or higher level of summarization, which would be written to the database.
This could either be managed through a right-click / pop-up menu, or through a dialog, or some other means.

Please publish AppImage

Please publish the AppImage on GitHub Releases, thanks.

Add multithreading

Useful for peak detection, compound matching, and other intensive processes.

Version 8.1 GUI updates

Remember window size of window library dialog
Remember column widths (or pack to show entire library name)
add an "Unload" button to library dialog (to unload libraries without deleting them from the SQL database).
Library does not always appear when loaded in Maven
Add version number to the top of the screen

Maven Crashes when clicking peakgroups table

Version: 8.0.25
Dataset: X0110-M001A

What happened:
Clicking around peak groups table rumsdb, and it crashed.

Samples were located remotely (on network drive)

error log:

Start groupCount= 59
Stop groupCount= 51
	groupPeaks() msec= 390
	computeEICs() Done.
 EicWidget::replot(PeakGroup* group ) group= 0x7f84c0004890
 EicWidget::setFocusLine(float rt)
addMS2Events()  found= 582
SpectraWidget::setScan(scan) 
MassCalcWidget::setPeakGroup(PeakGroup* grp)
Maven(5434,0x11251f5c0) malloc: Incorrect checksum for freed object 0x7f83e69ba220: probably modified after being freed.
Corrupt value: 0x6000000090c83ed1
Maven(5434,0x11251f5c0) malloc: *** set a breakpoint in malloc_error_break to debug
Abort trap: 6

Direct Infusion Peak Groups not rendering spectra in 8.1.4

To repoduce:

Create and save a direct infusion analysis in 8.1.4.

close Maven and open the file again. None of the observed spectra are being shown in the spectrawidget.

This appears to be associated with using the theoretical m/z instead of the average of the window m/z

Bug report uses an old URL

The bug report button on MAVEN (bottom right) uses an old URL (http://genomics-pubs.princeton.edu/mzroll/index.php?show=bugs) which links to a google form. Is this still valid? Or should it be updated? Go directly to GitHub issues? Updated form?

Issue identifying dual 13C/2H labeled peaks

Maven (old version) seems able to identify peaks that are isotopes with either 13C or 2H, but does not seem able to pick up any peaks that contain 13C and 2H combined.

I'm gathering information and sample data so I can reproduce this issue using the updated code. I'll update this issue as I get more details, etc.

MAVEN Crashes when picking peak on large metabolomics dataset

MAVEN version 8.0.21

Opened dataset --> loaded libraries --> picked ~4 peaks before it crashed. This is happening very frequently with larger datasets.

CompoundSearch produces different scores with subset library

To reproduce:

Load the X0098 M004A set, 3x bead and 3x no bead (6 samples).

Load the compound library 20180410-Calico-Lipids-neg.msp (available on group/massspec, or contact Phil).
Load the attached subset compound library:
20180410-Calico-Lipids-neg-issue2-subset-allAdducts.txt

Perform 2x compound searches, one against each library.

Note that the subset library is just a subset taken from the larger library.

Use these parameters:
-> Must have MS2: TRUE
-> Min Good Peak / Group: 3
-> Min Peak Intensity: 500000
-> Scoring Algorithm: HyperGeomScore or NumMatches (actually, probably any will work)

Clear Clusters, and observe results.

Specifically, PI(18:2,18:0) has different scores, even though it should not.

Note that the correct score is obtained from the subset library. So, we might hypothesize that the addition of extra entries in the library (for example, PI(18:2, 18:0) may be confused by PI(18:0,18:2)) may be causing the problem.

maven could not extracts EICS from the full scan MS1 data

I would like to extract a compound in the full scan MS1 data, the knows.csv was also edited by hands. But the maven could do not extract any signal, although the targeted m/z was right.

Plot isotope fraction for each sample

Plots of isotope fractions used to be plotted in older version of Maven, but are not in current versions (8.0+)

This was requested by Zhaoyue Zhang.

Import/Export function for sample file setup

Creating an import/export function for file labeling, sorting and grouping where we can import pre-existing setups to new mzrollDB files. Particularly useful and time saving for large sample volumes. Differences in sample names (e.g. method M002A to M005A) could be user defined.

Set up mzSample cache to avoid loading all sample data into memory

To allow for the loading of 1000s of samples in a single experiment.

One line per compound in direct infusion results

Currently, direct infusion results report one line per compound per sample. It would be better to report one line per compound, with the option to click through samples using the MS2 list widget.

Maven crashes after program closed

This has existed for a long time, it would be nice to fix this problem!

For DI spectra, show unnormalized, unadjusted fragmentation intensities

Currently not showing the raw intensity values, perhaps including some normalization / baseline estimation assumptions that make sense for DDA MS2 spectra, but not for direct infusion spectra.

Update CHANGELOG.md (and commit id?) for release 8.0.2

It would be nice to update the CHANGELOG for each release. Also, it seems that 8.0.2 is broken (at least for Windows). Perhaps we can move that tag (or create 8.0.3) on the latest HEAD (which does seem to be building OK).

MS2 List mysteriously disappearing

Clicking around shows the MS2 list appearing, and mysteriously disappearing.

Patch up memory leaks in bookmarking

Memory consumption is increasing on the order of 0.5- 1GB with every bookmark, indicating serious memory leaks.

Support Direct Infusion Data

For example, add an option to run peaks that would do MS/MS matching only with no peak groups.

MAVEN reports isotopes even when they are not indicated in the preferences

If any isotope is indicated in the preferences, all isotopes are still searched for a reported. In addition, the isotope widget is not updated when no isotopes are found, leaving the widget populated with the last found list.

Fragmentation scoring producing bad values

Identified by Bryson in Maven 8.0.18. See screenshot.

MAVEN crashes on subset DB

From Bryson:

Hi Eugene,  

I'm having Maven crash on a data set I'm tring to work up.  Below is the output when the crash happens.  Every time it seems to be when I am switching between compounds in the list of standards (though not on any specific one).  

Any help?

-------

overlayCompound() L-Arginine #theory=51     #obs=230           #matched=0
SpectraWidget::setScan(scan,min,max) : 0
MassCalcWidget::setPeakGroup(PeakGroup* grp)
SpectraWidget::setScan(scan)
overlayCompound() L-Arginine #theory=51     #obs=230           #matched=0
SpectraWidget::setScan(scan,min,max) : 0
SpectraWidget::setScan(peak)
Isotope Calculation:  true false false true
SpectraWidget::setScan(scan)
Scans=16
Reference
26165.134777.127610.995029.297850.411754212001366417.816212728435012160315925213585418092112947198223.1
GalleryWidget::replot()
GalleryWidget::resize()
GalleryWidget::replot()
MainWindow::bookmarkPeakGroup(group)
 EicWidget::setFocusLine(float rt)
LigandWidget::showLigand()
getUserAdduct::[M-H]-
setCompoundFocus:Ornithine [M-H]- 1.24 mass=132.09 mz=131.083
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00186174 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00187181 0.890546 2.08145
 EicWidget::computeEICs()
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00188187 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00189193 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00190199 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00191206 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00179127 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00180134 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.0018114 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00182146 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00183153 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00184159 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00185165 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00186171 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00187178 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00188184 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.0018919 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00190196 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00191203 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00192209 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00180131 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00181137 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00182143 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.0018315 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00184156 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00185162 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00186168 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00187175 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00188181 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00189187 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00190194 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.001912 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00192206 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0008 0.00193212 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00173104 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00174108 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00175111 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00176114 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00177118 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00178121 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00179125 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00174111 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00175117 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00176123 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.0017713 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00178136 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00179142 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00180148 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00181155 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00182161 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00183167 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00184173 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.0018518 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00186186 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00187192 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00175114 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.0017612 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00177127 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00178133 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00179139 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00180145 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00181152 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00182158 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00183164 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00184171 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00185177 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00186183 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00187189 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00188196 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00176117 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00177124 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.0017813 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00179136 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00180142 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00181149 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00182155 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00183161 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00184168 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00185174 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.0018618 0.890546 2.08145
           computeEICs() pullEics().. msec= 34
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00187186 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00188193 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00189199 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00177121 0.890546 2.08145
Start groupCount= 18
Stop groupCount= 18
           groupPeaks() msec= 36
           computeEICs() Done.
 EicWidget::replot(PeakGroup* group ) group= 0x0
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00178127 0.890546 2.08145
getEIC(mzrange,rtrange,mslevel): is empty: 50.0016 0.00179133 0.890546 2.08145
Maven(92858,0x70000ca8a000) malloc: *** mach_vm_map(size=14757395258967642112) failed (error code=3)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
libc++abi.dylib: terminating with uncaught exception of type std::bad_alloc: std::bad_alloc
Abort trap: 6

Flexibility around sample coloring

Option to assign the same color to a group of samples.

Similarly, change all in Set column to same value.

Perhaps just filter a set of samples and apply a change to the whole set.

Maven8.0.17 crashing when gsync is active

It so happened that Maven crashed again and I believe there is a pattern with that when google sync is operating.
I ran Maven 8.0.17 yesterday without problems and today it crashes all the time. The difference is that today I have google sync running and it currently tries to sync the peakdetector file I am working on. Here is the crash report:

Process: Maven [57032]
Path: /Applications/Maven8-0-17.app/Contents/MacOS/Maven
Identifier: test.Maven
Version: 0
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Maven [57032]
User ID: 501

Date/Time: 2019-06-15 15:19:48.477 -0700
OS Version: Mac OS X 10.14.2 (18C54)
Report Version: 12
Bridge OS Version: 3.3 (16P3133)
Anonymous UUID: 4AAD1764-F878-B5EE-F93C-F4FE82B180A6

Sleep/Wake UUID: 2154D0BA-1484-484A-BE78-6B061FFFAD85

Time Awake Since Boot: 230000 seconds
Time Since Wake: 3400 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called
Maven(57032,0x110d455c0) malloc: tiny_free_list_remove_ptr: Internal invariant broken (prev ptr of next): ptr=0x7fb09496d1e0, next_prev=0x7fb09497f770

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6ac0c23e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6acc2c1c pthread_kill + 285
2 libsystem_c.dylib 0x00007fff6ab751c9 abort + 127
3 libsystem_malloc.dylib 0x00007fff6ac846e2 malloc_vreport + 545
4 libsystem_malloc.dylib 0x00007fff6ac9886c malloc_zone_error + 184
5 libsystem_malloc.dylib 0x00007fff6ac81130 tiny_free_list_remove_ptr + 589
6 libsystem_malloc.dylib 0x00007fff6ac7eaee tiny_free_no_lock + 933
7 libsystem_malloc.dylib 0x00007fff6ac7e631 free_tiny + 483
8 test.Maven 0x0000000102e45957 Fragment::sortByMz() + 1367
9 test.Maven 0x0000000102e4950b Fragment::findFragPairsGreedyMz(Fragment*, Fragment*, float) + 43
10 test.Maven 0x0000000102e48dd9 Fragment::scoreMatch(Fragment*, float) + 265
11 test.Maven 0x0000000102e3e8e7 Compound::scoreCompoundHit(Fragment*, float, bool) + 791
12 test.Maven 0x0000000102d673b8 MassCalcWidget::setFragmentationScan(Scan*) + 392
13 test.Maven 0x0000000102d56c19 EicPoint::mousePressEvent(QGraphicsSceneMouseEvent*) + 265
14 org.qt-project.QtWidgets 0x0000000103374c29 QGraphicsItem::sceneEvent(QEvent*) + 457
15 org.qt-project.QtWidgets 0x000000010339b46e 0x103061000 + 3384430
16 org.qt-project.QtWidgets 0x000000010339bbec 0x103061000 + 3386348
17 org.qt-project.QtWidgets 0x00000001033a490a QGraphicsScene::mousePressEvent(QGraphicsSceneMouseEvent*) + 90
18 org.qt-project.QtWidgets 0x00000001033a00e0 QGraphicsScene::event(QEvent*) + 912
19 org.qt-project.QtWidgets 0x0000000103070bfd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
20 org.qt-project.QtWidgets 0x000000010307200b QApplication::notify(QObject*, QEvent*) + 555
21 org.qt-project.QtCore 0x0000000103ee5dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
22 org.qt-project.QtWidgets 0x00000001033c767c QGraphicsView::mousePressEvent(QMouseEvent*) + 956
23 test.Maven 0x0000000102d77574 EicWidget::mousePressEvent(QMouseEvent*) + 196
24 org.qt-project.QtWidgets 0x00000001030adc85 QWidget::event(QEvent*) + 437
25 org.qt-project.QtWidgets 0x00000001031577dd QFrame::event(QEvent*) + 45
26 org.qt-project.QtWidgets 0x00000001033c65b7 QGraphicsView::viewportEvent(QEvent*) + 1191
27 org.qt-project.QtCore 0x0000000103ee60d2 QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 210
28 org.qt-project.QtWidgets 0x0000000103070be8 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 248
29 org.qt-project.QtWidgets 0x000000010307393d QApplication::notify(QObject*, QEvent*) + 7005
30 org.qt-project.QtCore 0x0000000103ee5dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
31 org.qt-project.QtWidgets 0x000000010307154e QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 910
32 org.qt-project.QtWidgets 0x00000001030cd96a 0x103061000 + 444778
33 org.qt-project.QtWidgets 0x00000001030cc625 0x103061000 + 439845
34 org.qt-project.QtWidgets 0x0000000103070bfd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
35 org.qt-project.QtWidgets 0x000000010307200b QApplication::notify(QObject*, QEvent*) + 555
36 org.qt-project.QtCore 0x0000000103ee5dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
37 org.qt-project.QtGui 0x000000010362d903 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3651
38 org.qt-project.QtGui 0x00000001036155bb QWindowSystemInterface::sendWindowSystemEvents(QFlagsQEventLoop::ProcessEventsFlag) + 171
39 libqcocoa.dylib 0x0000000105dccd4e 0x105d99000 + 212302
40 libqcocoa.dylib 0x0000000105dcd511 0x105d99000 + 214289
41 com.apple.CoreFoundation 0x00007fff3d8a7475 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17
42 com.apple.CoreFoundation 0x00007fff3d8a741b __CFRunLoopDoSource0 + 108
43 com.apple.CoreFoundation 0x00007fff3d88aeb5 __CFRunLoopDoSources0 + 195
44 com.apple.CoreFoundation 0x00007fff3d88a45e __CFRunLoopRun + 1219
45 com.apple.CoreFoundation 0x00007fff3d889d48 CFRunLoopRunSpecific + 463
46 com.apple.HIToolbox 0x00007fff3cb20ab5 RunCurrentEventLoopInMode + 293
47 com.apple.HIToolbox 0x00007fff3cb206f4 ReceiveNextEventCommon + 371
48 com.apple.HIToolbox 0x00007fff3cb20568 _BlockUntilNextEventMatchingListInModeWithFilter + 64
49 com.apple.AppKit 0x00007fff3addb363 _DPSNextEvent + 997
50 com.apple.AppKit 0x00007fff3adda102 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
51 com.apple.AppKit 0x00007fff3add4165 -[NSApplication run] + 699
52 libqcocoa.dylib 0x0000000105dcc38d 0x105d99000 + 209805
53 org.qt-project.QtCore 0x0000000103ee19be QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 398
54 org.qt-project.QtCore 0x0000000103ee64d1 QCoreApplication::exec() + 369
55 test.Maven 0x0000000102d75a61 main + 1601
56 libdyld.dylib 0x00007fff6aacced9 start + 1

Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6ac0617a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6ac066d0 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3d88b0c2 __CFRunLoopServiceMachPort + 337
3 com.apple.CoreFoundation 0x00007fff3d88a611 __CFRunLoopRun + 1654
4 com.apple.CoreFoundation 0x00007fff3d889d48 CFRunLoopRunSpecific + 463
5 com.apple.AppKit 0x00007fff3ade3f89 _NSEventThread + 160
6 libsystem_pthread.dylib 0x00007fff6acc0305 _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff6acc326f _pthread_start + 70
8 libsystem_pthread.dylib 0x00007fff6acbf415 thread_start + 13

Thread 2:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 3:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 4:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 5:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 6:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000110d455c0 rcx: 0x00007ffeecf0aa18 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffeecf0aa50 rsp: 0x00007ffeecf0aa18
r8: 0x0000000000000000 r9: 0x00007ffeecf0a970 r10: 0x0000000000000000 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000000107b12000 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff6ac0c23e rfl: 0x0000000000000206 cr2: 0x00007fff9d8b3188

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:
0x102cf2000 - 0x102f4bffb +test.Maven (0) /Applications/Maven8-0-17.app/Contents/MacOS/Maven
0x102fbd000 - 0x102fe7ffb +org.qt-project.QtPrintSupport (5.12 - 5.12.3) <4D44D0AA-4966-34F2-BDC7-68A77F0B52D9> /Applications/Maven8-0-17.app/Contents/Frameworks/QtPrintSupport.framework/Versions/5/QtPrintSupport
0x10300b000 - 0x10303effb +org.qt-project.QtOpenGL (5.12 - 5.12.3) <9ADB7D28-B203-3C44-A553-3B54D7E6527C> /Applications/Maven8-0-17.app/Contents/Frameworks/QtOpenGL.framework/Versions/5/QtOpenGL
0x103061000 - 0x103499ff7 +org.qt-project.QtWidgets (5.12 - 5.12.3) <1850B0E7-D0AF-3C4C-B9D8-0950170AB11B> /Applications/Maven8-0-17.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
0x1035fc000 - 0x103a30fe7 +org.qt-project.QtGui (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui
0x103b34000 - 0x103b57ff7 +org.qt-project.QtSql (5.12 - 5.12.3) <73359EAA-5D9B-3496-88F6-8AA716721943> /Applications/Maven8-0-17.app/Contents/Frameworks/QtSql.framework/Versions/5/QtSql
0x103b6b000 - 0x103b95fff +org.qt-project.QtXml (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtXml.framework/Versions/5/QtXml
0x103ba9000 - 0x103cb6ff7 +org.qt-project.QtNetwork (5.12 - 5.12.3) <541D1DB3-0FD7-3657-8F73-36DCC0B53BDD> /Applications/Maven8-0-17.app/Contents/Frameworks/QtNetwork.framework/Versions/5/QtNetwork
0x103d04000 - 0x104213ff7 +org.qt-project.QtCore (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore
0x105d99000 - 0x105effff7 +libqcocoa.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/platforms/libqcocoa.dylib
0x105f4b000 - 0x105fabfff +org.qt-project.QtDBus (5.12 - 5.12.3) <0855D0EF-E8B9-33AA-95B9-063F219EC37A> /Applications/Maven8-0-17.app/Contents/Frameworks/QtDBus.framework/Versions/5/QtDBus
0x10881a000 - 0x10883fff7 +libqmacstyle.dylib (0) <4DA7D579-4944-3EB8-862C-DEF2D191B1C1> /Applications/Maven8-0-17.app/Contents/PlugIns/styles/libqmacstyle.dylib
0x108850000 - 0x108856ff3 +libqgif.dylib (0) <3C4AAC6E-4C35-3C60-99EA-3ACE94C45C9C> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqgif.dylib
0x10885a000 - 0x108861ffb +libqicns.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqicns.dylib
0x108866000 - 0x10886bff3 +libqico.dylib (0) <705769E6-42C2-3E20-AC58-4B8059AE9A6B> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqico.dylib
0x108870000 - 0x1088cffff +libqjpeg.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqjpeg.dylib
0x1088d5000 - 0x1088daff7 +libqmacheif.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqmacheif.dylib
0x1088df000 - 0x1088e4ffb +libqmacjp2.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqmacjp2.dylib
0x1088e9000 - 0x1088edffb +libqtga.dylib (0) <49542516-A931-3C0B-9125-F3C1D5957E6E> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqtga.dylib
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0x7fff6a61e000 - 0x7fff6a66bfff libssl.44.dylib (22.230.1) /usr/lib/libssl.44.dylib
0x7fff6a7a8000 - 0x7fff6a7abffb libutil.dylib (51.200.4) <10C5E165-0939-363A-9D13-7076F3B513EC> /usr/lib/libutil.dylib
0x7fff6a7ac000 - 0x7fff6a7b9fff libxar.1.dylib (404) <16E875B3-CF89-3059-87BB-36D301B32E7B> /usr/lib/libxar.1.dylib
0x7fff6a7be000 - 0x7fff6a8a1fff libxml2.2.dylib (32.8) <3E7875AC-3195-3800-AC48-8AA3B7BE51E4> /usr/lib/libxml2.2.dylib
0x7fff6a8a2000 - 0x7fff6a8caff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib
0x7fff6a8cb000 - 0x7fff6a8ddffb libz.1.dylib (70.200.4) <15F7B40A-424C-33BB-BF2C-7E8195128B78> /usr/lib/libz.1.dylib
0x7fff6a94e000 - 0x7fff6a952ff3 libcache.dylib (81) <704331AC-E43D-343A-8C24-39201142AF27> /usr/lib/system/libcache.dylib
0x7fff6a953000 - 0x7fff6a95dff3 libcommonCrypto.dylib (60118.220.1) <9C865644-EE9A-3662-AB77-7C8A5E561784> /usr/lib/system/libcommonCrypto.dylib
0x7fff6a95e000 - 0x7fff6a965fff libcompiler_rt.dylib (63.4) <817772E3-E836-3FFD-A39B-BDCD1C357221> /usr/lib/system/libcompiler_rt.dylib
0x7fff6a966000 - 0x7fff6a96fff3 libcopyfile.dylib (146.200.3) <5C5C4F35-DAB7-3CF1-940F-F47192AB8289> /usr/lib/system/libcopyfile.dylib
0x7fff6a970000 - 0x7fff6a9f4fdf libcorecrypto.dylib (602.230.1) /usr/lib/system/libcorecrypto.dylib
0x7fff6aa7b000 - 0x7fff6aab5ff7 libdispatch.dylib (1008.220.2) <2FDB1401-5119-3DF0-91F5-F4E105F00CD7> /usr/lib/system/libdispatch.dylib
0x7fff6aab6000 - 0x7fff6aae5ff3 libdyld.dylib (640.2) <376E3F3A-6942-3B0E-AD5E-4B97E8255CF5> /usr/lib/system/libdyld.dylib
0x7fff6aae6000 - 0x7fff6aae6ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6aae7000 - 0x7fff6aaf3ff7 libkxld.dylib (4903.231.4) <7275D7AD-54CE-30BF-9459-18EA77E28ACC> /usr/lib/system/libkxld.dylib
0x7fff6aaf4000 - 0x7fff6aaf4ff7 liblaunch.dylib (1336.220.5) <8563299C-2493-3DBD-8E88-3FC673DB47DD> /usr/lib/system/liblaunch.dylib
0x7fff6aaf5000 - 0x7fff6aafafff libmacho.dylib (921) <6ADB99F3-D142-3A0A-B3CE-031354766ACC> /usr/lib/system/libmacho.dylib
0x7fff6aafb000 - 0x7fff6aafdffb libquarantine.dylib (86.220.1) <58524FD7-63C5-38E0-9D90-845A79551C14> /usr/lib/system/libquarantine.dylib
0x7fff6aafe000 - 0x7fff6aaffff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff6ab00000 - 0x7fff6ab17ff3 libsystem_asl.dylib (356.200.4) <33C62769-1242-3BC1-9459-13CBCDECC7FE> /usr/lib/system/libsystem_asl.dylib
0x7fff6ab18000 - 0x7fff6ab18fff libsystem_blocks.dylib (73) <152EDADF-7D94-35F2-89B7-E66DCD945BBA> /usr/lib/system/libsystem_blocks.dylib
0x7fff6ab19000 - 0x7fff6aba1fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff6aba2000 - 0x7fff6aba5ff7 libsystem_configuration.dylib (963.200.27) <94898525-ECC8-3CC9-B312-CBEAAC305E32> /usr/lib/system/libsystem_configuration.dylib
0x7fff6aba6000 - 0x7fff6aba9ff7 libsystem_coreservices.dylib (66) <10818C17-70E1-328E-A3E3-C3EB81AEC590> /usr/lib/system/libsystem_coreservices.dylib
0x7fff6abaa000 - 0x7fff6abb0ffb libsystem_darwin.dylib (1272.200.26) <07468CF7-982F-37C4-83D0-D5E602A683AA> /usr/lib/system/libsystem_darwin.dylib
0x7fff6abb1000 - 0x7fff6abb7ff7 libsystem_dnssd.dylib (878.230.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6abb8000 - 0x7fff6ac04ff3 libsystem_info.dylib (517.200.9) <54B65F21-2E93-3579-9B72-6637A03245D9> /usr/lib/system/libsystem_info.dylib
0x7fff6ac05000 - 0x7fff6ac2dff7 libsystem_kernel.dylib (4903.231.4) /usr/lib/system/libsystem_kernel.dylib
0x7fff6ac2e000 - 0x7fff6ac79ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff6ac7a000 - 0x7fff6ac9eff7 libsystem_malloc.dylib (166.220.1) <4777DC06-F9C6-356E-82AB-86A1C6D62F3A> /usr/lib/system/libsystem_malloc.dylib
0x7fff6ac9f000 - 0x7fff6acaaff3 libsystem_networkextension.dylib (767.220.1) <74818C3D-9B68-3823-A737-6A4B782618F2> /usr/lib/system/libsystem_networkextension.dylib
0x7fff6acab000 - 0x7fff6acb2fff libsystem_notify.dylib (172.200.21) <65B3061D-41D7-3485-B217-A861E05AD50B> /usr/lib/system/libsystem_notify.dylib
0x7fff6acb3000 - 0x7fff6acbcfef libsystem_platform.dylib (177.200.16) <83DED753-51EC-3B8C-A98D-883A5184086B> /usr/lib/system/libsystem_platform.dylib
0x7fff6acbd000 - 0x7fff6acc7fff libsystem_pthread.dylib (330.230.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff6acc8000 - 0x7fff6accbff7 libsystem_sandbox.dylib (851.230.3) <4D0CB1CA-160C-3C29-BE5D-131D68D43B1B> /usr/lib/system/libsystem_sandbox.dylib
0x7fff6accc000 - 0x7fff6acceff3 libsystem_secinit.dylib (30.220.1) <5964B6D2-19D4-3CF9-BDBC-4EB1D42348F1> /usr/lib/system/libsystem_secinit.dylib
0x7fff6accf000 - 0x7fff6acd6ff7 libsystem_symptoms.dylib (820.237.2) <487E1794-4C6E-3B1B-9C55-95B1A5FF9B90> /usr/lib/system/libsystem_symptoms.dylib
0x7fff6acd7000 - 0x7fff6acecff7 libsystem_trace.dylib (906.220.1) <4D4BA88A-FA32-379D-8860-33838723B35F> /usr/lib/system/libsystem_trace.dylib
0x7fff6acee000 - 0x7fff6acf3ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6acf4000 - 0x7fff6ad24fff libxpc.dylib (1336.220.5) /usr/lib/system/libxpc.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 7
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 183805
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=488.5M resident=0K(0%) swapped_out_or_unallocated=488.5M(100%)
Writable regions: Total=9.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=9.0G(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 13.8M 9
CG image 100K 17
CoreAnimation 1868K 38
CoreGraphics 8K 2
CoreImage 168K 36
CoreUI image data 2188K 41
CoreUI image file 588K 10
Foundation 55.8M 9
Image IO 8K 3
Kernel Alloc Once 8K 2
MALLOC 8.7G 63
MALLOC guard page 32K 8
MALLOC_NANO (reserved) 256.0M 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 32K 2
STACK GUARD 56.0M 8
Stack 11.0M 8
VM_ALLOCATE 368K 29
__DATA 39.5M 373
__FONT_DATA 4K 2
__LINKEDIT 219.9M 31
__TEXT 268.6M 369
__UNICODE 564K 2
mapped file 444.6M 111
shared memory 1152K 20
=========== ======= =======
TOTAL 10.0G 1175
TOTAL, minus reserved VM space 9.8G 1175

Model: MacBookPro15,1, BootROM 220.240.2.0.0 (iBridge: 16.16.3133.0.0,0), 6 processors, Intel Core i7, 2.6 GHz, 32 GB, SMC
Graphics: Intel UHD Graphics 630, Intel UHD Graphics 630, Built-In
Graphics: Radeon Pro 560X, Radeon Pro 560X, PCIe
Memory Module: BANK 0/ChannelA-DIMM0, 16 GB, DDR4, 2400 MHz, Micron, 16ATS2G64HZ-2G6B1 16ATS2G64HZ-2G6B1
Memory Module: BANK 2/ChannelB-DIMM0, 16 GB, DDR4, 2400 MHz, Micron, 16ATS2G64HZ-2G6B1 16ATS2G64HZ-2G6B1
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Sep 18 2018 16:24:57 version 9.130.86.7.32.6.21 FWID 01-83a3fe91
Bluetooth: Version 6.0.9f2, 3 services, 27 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
USB Device: USB 3.1 Bus
USB Device: Yubikey 4 OTP+U2F+CCID
USB Device: USB2.0 Hub
USB Device: Razer Taipan
USB Device: USB-C Digital AV Multiport Adapter
USB Device: USB3.0 Hub
USB Device: iBridge Bus
USB Device: iBridge DFR brightness
USB Device: iBridge Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: iBridge ALS
USB Device: iBridge FaceTime HD Camera (Built-in)
USB Device: iBridge
Thunderbolt Bus: MacBook Pro, Apple Inc., 34.6
Thunderbolt Bus: MacBook Pro, Apple Inc., 34.6

In a previous crash it took google sync out as well but unfortunately I did not keep these crash reports.
I am working from a file on my local drive and started work when sync was already on. I saved regularly after library import and every 10-20 peaks picked. After the crash I opened the file again and saw that my bookmarks list was not saved. Similarly, libraries were not saved on the file either.

So I put google sync on pause which did not help not crashing again but did help with keeping the bookmarks and keeping about half the libraries loaded saved in the file. Here is the crash report:

Process: Maven [58251]
Path: /Applications/Maven8-0-17.app/Contents/MacOS/Maven
Identifier: test.Maven
Version: 0
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Maven [58251]
User ID: 501

Date/Time: 2019-06-15 15:53:36.322 -0700
OS Version: Mac OS X 10.14.2 (18C54)
Report Version: 12
Bridge OS Version: 3.3 (16P3133)
Anonymous UUID: 4AAD1764-F878-B5EE-F93C-F4FE82B180A6

Sleep/Wake UUID: 2154D0BA-1484-484A-BE78-6B061FFFAD85

Time Awake Since Boot: 230000 seconds
Time Since Wake: 5400 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called
Maven(58251,0x10a1775c0) malloc: tiny_free_list_remove_ptr: Internal invariant broken (prev ptr of next): ptr=0x7fcccd46c200, next_prev=0x7fcccd46b0c0

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6ac0c23e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6acc2c1c pthread_kill + 285
2 libsystem_c.dylib 0x00007fff6ab751c9 abort + 127
3 libsystem_malloc.dylib 0x00007fff6ac846e2 malloc_vreport + 545
4 libsystem_malloc.dylib 0x00007fff6ac9886c malloc_zone_error + 184
5 libsystem_malloc.dylib 0x00007fff6ac81130 tiny_free_list_remove_ptr + 589
6 libsystem_malloc.dylib 0x00007fff6ac7eaee tiny_free_no_lock + 933
7 libsystem_malloc.dylib 0x00007fff6ac7e631 free_tiny + 483
8 test.Maven 0x00000001024d9957 Fragment::sortByMz() + 1367
9 test.Maven 0x00000001024dd50b Fragment::findFragPairsGreedyMz(Fragment*, Fragment*, float) + 43
10 test.Maven 0x00000001024dcdd9 Fragment::scoreMatch(Fragment*, float) + 265
11 test.Maven 0x00000001024d28e7 Compound::scoreCompoundHit(Fragment*, float, bool) + 791
12 test.Maven 0x00000001023fb3b8 MassCalcWidget::setFragmentationScan(Scan*) + 392
13 test.Maven 0x00000001023eac19 EicPoint::mousePressEvent(QGraphicsSceneMouseEvent*) + 265
14 org.qt-project.QtWidgets 0x0000000102a09c29 QGraphicsItem::sceneEvent(QEvent*) + 457
15 org.qt-project.QtWidgets 0x0000000102a3046e 0x1026f6000 + 3384430
16 org.qt-project.QtWidgets 0x0000000102a30bec 0x1026f6000 + 3386348
17 org.qt-project.QtWidgets 0x0000000102a3990a QGraphicsScene::mousePressEvent(QGraphicsSceneMouseEvent*) + 90
18 org.qt-project.QtWidgets 0x0000000102a350e0 QGraphicsScene::event(QEvent*) + 912
19 org.qt-project.QtWidgets 0x0000000102705bfd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
20 org.qt-project.QtWidgets 0x000000010270700b QApplication::notify(QObject*, QEvent*) + 555
21 org.qt-project.QtCore 0x0000000103583dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
22 org.qt-project.QtWidgets 0x0000000102a5c67c QGraphicsView::mousePressEvent(QMouseEvent*) + 956
23 test.Maven 0x000000010240b574 EicWidget::mousePressEvent(QMouseEvent*) + 196
24 org.qt-project.QtWidgets 0x0000000102742c85 QWidget::event(QEvent*) + 437
25 org.qt-project.QtWidgets 0x00000001027ec7dd QFrame::event(QEvent*) + 45
26 org.qt-project.QtWidgets 0x0000000102a5b5b7 QGraphicsView::viewportEvent(QEvent*) + 1191
27 org.qt-project.QtCore 0x00000001035840d2 QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 210
28 org.qt-project.QtWidgets 0x0000000102705be8 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 248
29 org.qt-project.QtWidgets 0x000000010270893d QApplication::notify(QObject*, QEvent*) + 7005
30 org.qt-project.QtCore 0x0000000103583dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
31 org.qt-project.QtWidgets 0x000000010270654e QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 910
32 org.qt-project.QtWidgets 0x000000010276296a 0x1026f6000 + 444778
33 org.qt-project.QtWidgets 0x0000000102761625 0x1026f6000 + 439845
34 org.qt-project.QtWidgets 0x0000000102705bfd QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
35 org.qt-project.QtWidgets 0x000000010270700b QApplication::notify(QObject*, QEvent*) + 555
36 org.qt-project.QtCore 0x0000000103583dd8 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 168
37 org.qt-project.QtGui 0x0000000102cc5903 QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3651
38 org.qt-project.QtGui 0x0000000102cad5bb QWindowSystemInterface::sendWindowSystemEvents(QFlagsQEventLoop::ProcessEventsFlag) + 171
39 libqcocoa.dylib 0x0000000105466d4e 0x105433000 + 212302
40 libqcocoa.dylib 0x0000000105467511 0x105433000 + 214289
41 com.apple.CoreFoundation 0x00007fff3d8a7475 CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17
42 com.apple.CoreFoundation 0x00007fff3d8a741b __CFRunLoopDoSource0 + 108
43 com.apple.CoreFoundation 0x00007fff3d88aeb5 __CFRunLoopDoSources0 + 195
44 com.apple.CoreFoundation 0x00007fff3d88a45e __CFRunLoopRun + 1219
45 com.apple.CoreFoundation 0x00007fff3d889d48 CFRunLoopRunSpecific + 463
46 com.apple.HIToolbox 0x00007fff3cb20ab5 RunCurrentEventLoopInMode + 293
47 com.apple.HIToolbox 0x00007fff3cb206f4 ReceiveNextEventCommon + 371
48 com.apple.HIToolbox 0x00007fff3cb20568 _BlockUntilNextEventMatchingListInModeWithFilter + 64
49 com.apple.AppKit 0x00007fff3addb363 _DPSNextEvent + 997
50 com.apple.AppKit 0x00007fff3adda102 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1362
51 com.apple.AppKit 0x00007fff3add4165 -[NSApplication run] + 699
52 libqcocoa.dylib 0x000000010546638d 0x105433000 + 209805
53 org.qt-project.QtCore 0x000000010357f9be QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 398
54 org.qt-project.QtCore 0x00000001035844d1 QCoreApplication::exec() + 369
55 test.Maven 0x0000000102409a61 main + 1601
56 libdyld.dylib 0x00007fff6aacced9 start + 1

Thread 2:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 3:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x00006000003c80c0 0 + 105553120231616

Thread 4:
0 libsystem_pthread.dylib 0x00007fff6acbf3f8 start_wqthread + 0
1 ??? 0x0000000054485244 0 + 1414025796

Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010a1775c0 rcx: 0x00007ffeed876a78 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffeed876ab0 rsp: 0x00007ffeed876a78
r8: 0x0000000000000000 r9: 0x00007ffeed8769d0 r10: 0x0000000000000000 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x00000001073ee000 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff6ac0c23e rfl: 0x0000000000000206 cr2: 0x00007fff9d8b3188

Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133

Binary Images:
0x102386000 - 0x1025dfffb +test.Maven (0) /Applications/Maven8-0-17.app/Contents/MacOS/Maven
0x102652000 - 0x10267cffb +org.qt-project.QtPrintSupport (5.12 - 5.12.3) <4D44D0AA-4966-34F2-BDC7-68A77F0B52D9> /Applications/Maven8-0-17.app/Contents/Frameworks/QtPrintSupport.framework/Versions/5/QtPrintSupport
0x10269f000 - 0x1026d2ffb +org.qt-project.QtOpenGL (5.12 - 5.12.3) <9ADB7D28-B203-3C44-A553-3B54D7E6527C> /Applications/Maven8-0-17.app/Contents/Frameworks/QtOpenGL.framework/Versions/5/QtOpenGL
0x1026f6000 - 0x102b2eff7 +org.qt-project.QtWidgets (5.12 - 5.12.3) <1850B0E7-D0AF-3C4C-B9D8-0950170AB11B> /Applications/Maven8-0-17.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
0x102c94000 - 0x1030c8fe7 +org.qt-project.QtGui (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui
0x1031d0000 - 0x1031f3ff7 +org.qt-project.QtSql (5.12 - 5.12.3) <73359EAA-5D9B-3496-88F6-8AA716721943> /Applications/Maven8-0-17.app/Contents/Frameworks/QtSql.framework/Versions/5/QtSql
0x10320a000 - 0x103234fff +org.qt-project.QtXml (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtXml.framework/Versions/5/QtXml
0x10324a000 - 0x103357ff7 +org.qt-project.QtNetwork (5.12 - 5.12.3) <541D1DB3-0FD7-3657-8F73-36DCC0B53BDD> /Applications/Maven8-0-17.app/Contents/Frameworks/QtNetwork.framework/Versions/5/QtNetwork
0x1033a2000 - 0x1038b1ff7 +org.qt-project.QtCore (5.12 - 5.12.3) /Applications/Maven8-0-17.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore
0x105433000 - 0x105599ff7 +libqcocoa.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/platforms/libqcocoa.dylib
0x1055e5000 - 0x105645fff +org.qt-project.QtDBus (5.12 - 5.12.3) <0855D0EF-E8B9-33AA-95B9-063F219EC37A> /Applications/Maven8-0-17.app/Contents/Frameworks/QtDBus.framework/Versions/5/QtDBus
0x107eb9000 - 0x107edeff7 +libqmacstyle.dylib (0) <4DA7D579-4944-3EB8-862C-DEF2D191B1C1> /Applications/Maven8-0-17.app/Contents/PlugIns/styles/libqmacstyle.dylib
0x107eef000 - 0x107ef5ff3 +libqgif.dylib (0) <3C4AAC6E-4C35-3C60-99EA-3ACE94C45C9C> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqgif.dylib
0x107ef9000 - 0x107f00ffb +libqicns.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqicns.dylib
0x107f05000 - 0x107f0aff3 +libqico.dylib (0) <705769E6-42C2-3E20-AC58-4B8059AE9A6B> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqico.dylib
0x107f0f000 - 0x107f6efff +libqjpeg.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqjpeg.dylib
0x107f74000 - 0x107f79ff7 +libqmacheif.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqmacheif.dylib
0x107f7e000 - 0x107f83ffb +libqmacjp2.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqmacjp2.dylib
0x107f88000 - 0x107f8cffb +libqtga.dylib (0) <49542516-A931-3C0B-9125-F3C1D5957E6E> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqtga.dylib
0x107f90000 - 0x107ff3ff3 +libqtiff.dylib (0) <870190CB-44B7-31F4-B676-E04E546C3071> /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqtiff.dylib
0x107ffb000 - 0x107ffeffb +libqwbmp.dylib (0) /Applications/Maven8-0-17.app/Contents/PlugIns/imageformats/libqwbmp.dylib
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0x7fff6a8a2000 - 0x7fff6a8caff3 libxslt.1.dylib (16.1) /usr/lib/libxslt.1.dylib
0x7fff6a8cb000 - 0x7fff6a8ddffb libz.1.dylib (70.200.4) <15F7B40A-424C-33BB-BF2C-7E8195128B78> /usr/lib/libz.1.dylib
0x7fff6a94e000 - 0x7fff6a952ff3 libcache.dylib (81) <704331AC-E43D-343A-8C24-39201142AF27> /usr/lib/system/libcache.dylib
0x7fff6a953000 - 0x7fff6a95dff3 libcommonCrypto.dylib (60118.220.1) <9C865644-EE9A-3662-AB77-7C8A5E561784> /usr/lib/system/libcommonCrypto.dylib
0x7fff6a95e000 - 0x7fff6a965fff libcompiler_rt.dylib (63.4) <817772E3-E836-3FFD-A39B-BDCD1C357221> /usr/lib/system/libcompiler_rt.dylib
0x7fff6a966000 - 0x7fff6a96fff3 libcopyfile.dylib (146.200.3) <5C5C4F35-DAB7-3CF1-940F-F47192AB8289> /usr/lib/system/libcopyfile.dylib
0x7fff6a970000 - 0x7fff6a9f4fdf libcorecrypto.dylib (602.230.1) /usr/lib/system/libcorecrypto.dylib
0x7fff6aa7b000 - 0x7fff6aab5ff7 libdispatch.dylib (1008.220.2) <2FDB1401-5119-3DF0-91F5-F4E105F00CD7> /usr/lib/system/libdispatch.dylib
0x7fff6aab6000 - 0x7fff6aae5ff3 libdyld.dylib (640.2) <376E3F3A-6942-3B0E-AD5E-4B97E8255CF5> /usr/lib/system/libdyld.dylib
0x7fff6aae6000 - 0x7fff6aae6ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6aae7000 - 0x7fff6aaf3ff7 libkxld.dylib (4903.231.4) <7275D7AD-54CE-30BF-9459-18EA77E28ACC> /usr/lib/system/libkxld.dylib
0x7fff6aaf4000 - 0x7fff6aaf4ff7 liblaunch.dylib (1336.220.5) <8563299C-2493-3DBD-8E88-3FC673DB47DD> /usr/lib/system/liblaunch.dylib
0x7fff6aaf5000 - 0x7fff6aafafff libmacho.dylib (921) <6ADB99F3-D142-3A0A-B3CE-031354766ACC> /usr/lib/system/libmacho.dylib
0x7fff6aafb000 - 0x7fff6aafdffb libquarantine.dylib (86.220.1) <58524FD7-63C5-38E0-9D90-845A79551C14> /usr/lib/system/libquarantine.dylib
0x7fff6aafe000 - 0x7fff6aaffff3 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff6ab00000 - 0x7fff6ab17ff3 libsystem_asl.dylib (356.200.4) <33C62769-1242-3BC1-9459-13CBCDECC7FE> /usr/lib/system/libsystem_asl.dylib
0x7fff6ab18000 - 0x7fff6ab18fff libsystem_blocks.dylib (73) <152EDADF-7D94-35F2-89B7-E66DCD945BBA> /usr/lib/system/libsystem_blocks.dylib
0x7fff6ab19000 - 0x7fff6aba1fff libsystem_c.dylib (1272.200.26) /usr/lib/system/libsystem_c.dylib
0x7fff6aba2000 - 0x7fff6aba5ff7 libsystem_configuration.dylib (963.200.27) <94898525-ECC8-3CC9-B312-CBEAAC305E32> /usr/lib/system/libsystem_configuration.dylib
0x7fff6aba6000 - 0x7fff6aba9ff7 libsystem_coreservices.dylib (66) <10818C17-70E1-328E-A3E3-C3EB81AEC590> /usr/lib/system/libsystem_coreservices.dylib
0x7fff6abaa000 - 0x7fff6abb0ffb libsystem_darwin.dylib (1272.200.26) <07468CF7-982F-37C4-83D0-D5E602A683AA> /usr/lib/system/libsystem_darwin.dylib
0x7fff6abb1000 - 0x7fff6abb7ff7 libsystem_dnssd.dylib (878.230.2) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6abb8000 - 0x7fff6ac04ff3 libsystem_info.dylib (517.200.9) <54B65F21-2E93-3579-9B72-6637A03245D9> /usr/lib/system/libsystem_info.dylib
0x7fff6ac05000 - 0x7fff6ac2dff7 libsystem_kernel.dylib (4903.231.4) /usr/lib/system/libsystem_kernel.dylib
0x7fff6ac2e000 - 0x7fff6ac79ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff6ac7a000 - 0x7fff6ac9eff7 libsystem_malloc.dylib (166.220.1) <4777DC06-F9C6-356E-82AB-86A1C6D62F3A> /usr/lib/system/libsystem_malloc.dylib
0x7fff6ac9f000 - 0x7fff6acaaff3 libsystem_networkextension.dylib (767.220.1) <74818C3D-9B68-3823-A737-6A4B782618F2> /usr/lib/system/libsystem_networkextension.dylib
0x7fff6acab000 - 0x7fff6acb2fff libsystem_notify.dylib (172.200.21) <65B3061D-41D7-3485-B217-A861E05AD50B> /usr/lib/system/libsystem_notify.dylib
0x7fff6acb3000 - 0x7fff6acbcfef libsystem_platform.dylib (177.200.16) <83DED753-51EC-3B8C-A98D-883A5184086B> /usr/lib/system/libsystem_platform.dylib
0x7fff6acbd000 - 0x7fff6acc7fff libsystem_pthread.dylib (330.230.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff6acc8000 - 0x7fff6accbff7 libsystem_sandbox.dylib (851.230.3) <4D0CB1CA-160C-3C29-BE5D-131D68D43B1B> /usr/lib/system/libsystem_sandbox.dylib
0x7fff6accc000 - 0x7fff6acceff3 libsystem_secinit.dylib (30.220.1) <5964B6D2-19D4-3CF9-BDBC-4EB1D42348F1> /usr/lib/system/libsystem_secinit.dylib
0x7fff6accf000 - 0x7fff6acd6ff7 libsystem_symptoms.dylib (820.237.2) <487E1794-4C6E-3B1B-9C55-95B1A5FF9B90> /usr/lib/system/libsystem_symptoms.dylib
0x7fff6acd7000 - 0x7fff6acecff7 libsystem_trace.dylib (906.220.1) <4D4BA88A-FA32-379D-8860-33838723B35F> /usr/lib/system/libsystem_trace.dylib
0x7fff6acee000 - 0x7fff6acf3ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6acf4000 - 0x7fff6ad24fff libxpc.dylib (1336.220.5) /usr/lib/system/libxpc.dylib

External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 8
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 186556
thread_create: 0
thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=488.5M resident=0K(0%) swapped_out_or_unallocated=488.5M(100%)
Writable regions: Total=9.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=9.1G(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 5
Activity Tracing 256K 2
CG backing stores 13.8M 8
CG image 224K 22
CoreAnimation 2464K 60
CoreGraphics 8K 2
CoreImage 172K 37
CoreUI image data 2200K 37
CoreUI image file 588K 8
Foundation 55.8M 7
Image IO 76K 5
Kernel Alloc Once 8K 2
MALLOC 8.8G 62
MALLOC guard page 32K 8
MALLOC_NANO (reserved) 256.0M 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 32K 2
STACK GUARD 56.0M 6
Stack 10.0M 6
VM_ALLOCATE 384K 32
__DATA 39.5M 371
__FONT_DATA 4K 2
__LINKEDIT 219.9M 31
__TEXT 268.6M 369
__UNICODE 564K 2
mapped file 68.0M 76
shared memory 1148K 19
=========== ======= =======
TOTAL 9.7G 1158
TOTAL, minus reserved VM space 9.5G 1158

I did encounter one more crash after switching back to Maven 8.0.12 but I could run longer on this version.
After restarting gsync and letting the files completely sync and then pausing again, version 12 ran withoutn any crashes

Cheers,

Tobi

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