Topic: metabolomics Goto Github
Some thing interesting about metabolomics
Some thing interesting about metabolomics
metabolomics,Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
Organization: ablab
metabolomics,Fiora is an in silico fragmentation algorithm for small compounds and produces simulated tandem mass spectra (MS/MS). The framework uses a graph neural network as the core module and edge prediction to identify likely bond cleavages and fragment ion intensities.
Organization: bamescience
metabolomics,Chemical Similarity Enrichment analysis of metabolomics datasets
User: barupal
metabolomics,Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Organization: bebop
metabolomics,Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/melonnpan
metabolomics,Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
Organization: biocore
metabolomics,A Python 3 implementation of orthogonal projection to latent structures
Organization: birg
metabolomics,Public Workflows at GNPS
Organization: ccms-ucsd
Home Page: https://gnps.ucsd.edu/
metabolomics,Documentation for GNPS and related tools as written in mkdocs
Organization: ccms-ucsd
Home Page: https://ccms-ucsd.github.io/GNPSDocumentation/
metabolomics,(Multiblock) Partial Least Squares Regression for Python
Organization: dtucomputestatisticsanddataanalysis
Home Page: https://mbpls.readthedocs.io
metabolomics,LC-MS data processing tool for large-scale metabolomics experiments.
Organization: elucidatainc
Home Page: https://resources.elucidata.io/elmaven/
metabolomics,CoreMS is a comprehensive mass spectrometry software framework
Organization: emsl-computing
metabolomics,Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)
User: ethanbass
Home Page: https://ethanbass.github.io/chromConverter/
metabolomics,Maven GUI: Metabolomics Analysis and Visualization Engine
User: eugenemel
Home Page: https://github.com/eugenemel/maven/releases
metabolomics,TidyMS: Tools for working with MS data in untargeted metabolomics
User: griquelme
metabolomics,Python library for large-scale targeted metabolomics.
Organization: lewisresearchgroup
Home Page: https://lewisresearchgroup.github.io/ms-mint/
metabolomics,Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
Organization: matchms
metabolomics,Visualization and analysis platform for metabolic data and network pattern recognition
Organization: metaboverse
Home Page: https://metaboverse.readthedocs.io/en/latest
metabolomics,Cloud engine and platform for metabolite annotation for imaging mass spectrometry
Organization: metaspace2020
Home Page: https://metaspace2020.eu/
metabolomics,IsoCor: Isotope Correction for mass spectrometry labeling experiments
Organization: metasys-lisbp
Home Page: https://isocor.readthedocs.io
metabolomics,Calculation and visualization of molecular networks based on t-SNE algorithm
Organization: metgem
Home Page: https://metgem.github.io
metabolomics,National Microbiome Data Collaborative (NMDC) unified data model
Organization: microbiomedata
Home Page: https://microbiomedata.github.io/nmdc-schema/
metabolomics,Interactive software to analyze and browse mass spectrometry data
User: mjhelf
Home Page: https://metaboseek.com
metabolomics,Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
User: mmzdouc
Home Page: https://fermo.bioinformatics.nl/example
metabolomics,Web-based software for visualization of molecular maps in 2D and 3D
Organization: molecularcartography
metabolomics,Workflow for LC-MS feature analysis and spatial mapping
Organization: molecularcartography
metabolomics,Retip - Retention Time prediction for metabolomics
Organization: olobion
metabolomics,Implementation of PLS-DA and OPLS-DA for high dimensional data, like MS in metabolomics.
Organization: omicometrics
metabolomics,OmicsSuite website for releasing new version.
Organization: omicssuite
Home Page: https://omicssuite.github.io/
metabolomics,The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Organization: opencobra
Home Page: https://opencobra.github.io/cobratoolbox
metabolomics,The codebase of the OpenMS project
Organization: openms
Home Page: https://www.openms.de
metabolomics,The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
Organization: phenomecentre
metabolomics,In silico chemical library engine for high-accuracy chemical property prediction
Organization: pnnl
metabolomics,pyQms, generalized, fast and accurate mass spectrometry data quantification
Organization: pyqms
metabolomics,The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
Organization: rformassspectrometry
Home Page: https://rformassspectrometry.github.io/metaRbolomics-book/
metabolomics,Quantitative features for mass spectrometry data
Organization: rformassspectrometry
Home Page: https://RforMassSpectrometry.github.io/QFeatures/
metabolomics,Low level infrastructure to handle MS spectra
Organization: rformassspectrometry
Home Page: https://rformassspectrometry.github.io/Spectra/
metabolomics,RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
User: rogerginber
metabolomics,Compare different differential abundance and expression methods
User: russel88
metabolomics,SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Organization: sirius-ms
metabolomics,sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Organization: sirius-ms
metabolomics,This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
User: sneumann
metabolomics,A collection of common mz values found in mass spectrometry.
User: stanstrup
metabolomics,Infer metabolic directions from moment differences of mass-weighted intensity distributions
User: tubanlee
Home Page: https://doi.org/10.5281/zenodo.10616979
metabolomics,metaX: a flexible and comprehensive software for processing omics data.
User: wenbostar
metabolomics,A deep learning toolkit for mass spectrometry
User: wfondrie
Home Page: https://wfondrie.github.io/depthcharge/
metabolomics,Galaxy tools for metabolomics maintained by Workflow4Metabolomics
Organization: workflow4metabolomics
Home Page: https://workflow4metabolomics.org/
metabolomics,Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
User: xieguigang
Home Page: https://mzkit.org
metabolomics,Online workflow guidelines for metabolomics
User: yufree
Home Page: https://bookdown.org/yufree/Metabolomics/
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