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bookdown

Authoring Books and Technical Documents with R Markdown

breakaway

Species richness with high diversity

chab-microbial-ecology

Code repository for Berry et al. (2017), "Cyanobacterial harmful algal blooms are a biological disturbance to western Lake Erie bacterial communities"

cheatsheets

RStudio Cheat Sheets

cloud-genomics

Lesson on Cloud/HPC for genomics lessons

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

complexselection

Code and data to identify selection on traits controlled by many loci

continuoustraits

course-starter-python

👩‍🏫🐍 Starter repo for building interactive Python courses

course-starter-r

👩‍🏫🇷 Starter repo for building interactive R courses

coursecomparativemethods

Examples of application of comparative methods in R

cshl_rnaseq

RNA-Seq Analysis with R/Bioconductor

curveball

Predicting microbial growth in a mixed culture from growth curve data

dabestr

Data Analysis with Bootstrap Estimation in R

data_to_viz

Leading to the dataviz you need

datapasta

On top of spaghetti, all covered in cheese....

dataviz

A book covering the fundamentals of data visualization

ddocent

a bash pipeline for RAD sequencing

ddrad-seq-pipeline

de-novo-transcriptome-assembly-pipeline

Combined de novo transcriptome assembly - multiple assemblers - multiple parameters

dea-notebooks

Repository for Digital Earth Australia Jupyter Notebooks: tools and workflows for geospatial analysis with Open Data Cube and xarray

dge_workshop

dgeclust

Hierarchical Non-Parametric Bayesian Clustering of Digital Expression Data

dib-training

Web site for Data Intensive Training at UC Davis

discretetraits

Exercises for methods to investigate discrete data evolution, ignoring diversification effects.

divnet

diversity estimation under ecological networks

dna-seq-analysis

my notes on whole exome and whole genome sequencing analysis

dsd

R code for Henshaw & Zemel (2017)

earth-observation-workshop

Code for Earth Observation for official statistics workshops 2018

easycodeml