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megaqc

Web application to collect and visualise data across multiple MultiQC runs.

metaboanalyst_docker

Docker for MetaboAnalyst 4.0

metaboanalystr

R package for MetaboAnalyst

metabolic

A scalable high-throughput metabolic and biogeochemical functional trait profiler

metagear

:exclamation: This is a read-only mirror of the CRAN R package repository. metagear — Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis. Homepage: http://lajeunesse.myweb.usf.edu

metamos

A metagenomic and isolate assembly and analysis pipeline built with AMOS

metavic

Virus metagenomics pipeline for unknown host or in absence of a host genome

methylpy

methylpy is a whole genome bisulfite sequencing analysis pipeline initiated by Mattew D. Schultz.

mgcv-esa-workshop

microbemiseq

Set of useful functions and scripts for analyzing amplicon Miseq data.

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

microbiomeworkshop

A workshop on microbiome analysis using Bioconductor

microbiouoe

R package for Buckling and Westra labgroups

misc

Miscellaneous scripts

mitohifi

Find, circularise and annotate mitogenome from PacBio assemblies

mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

mothur_krona

Script to convert mothur taxonomy summary files to Krona XML format.

motus_v2

motus - a tool for marker gene-based OTU (mOTU) profiling

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nbdime

Tools for diffing and merging of Jupyter notebooks.

necklace

Combine reference and assembled transcriptomes for RNA-Seq analysis

nls.multstart

Non-linear regression in R allowing multiple start parameters

nlsloop

A reliable and reproducible way of fitting non-linear regression over levels of a factor in R

notebook

Jupyter Interactive Notebook

numericalecology

code for Numerical Ecology with R

openmetagenometoolkit

Making Metagenomes Manageable

organization-genomics

Lesson on data organization and project setup for genomics

orp_website

Website for Oyster River Protocol

orthofinder

Phylogenetic orthology inference for comparative genomics

os-note

The Open Source Notebook