juadiegaitan Goto Github PK

eecseq

Protocol for Expressed Exome Capture Sequencing

embo_popgen

emp

Data, code, and analysis results for the Earth Microbiome Project.

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

epurate

A clean R Markdown template for your reports

esa2016rfunctions

The repository for course materials for the ESA 2016 Workshop I am running.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

euroibd

Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.3815

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

ffq

A tool to find sequencing data and metadata from public databases.

findorf

ORF prediction of de novo transcriptome assemblies

fineradstructure

A package for population structure inference from RAD-seq data

flye

De novo assembler for single molecule sequencing reads using repeat graphs

fungaltraits

A dynamic database of fungal trait measurements

galaxytrinityprotocol

Running the Trinity protocol via a Galaxy web interface.

gen242

Class: Data Analysis in Genome Biology

gen242-2016

Data Analysis in Genome Biology

genomics-workshop

Genomics workshop information

ggplotgui

ggplotgui

ggsignif

Easily add significance brackets to your ggplots

ggthemeassist

A RStudio addin for ggplot2 theme tweaking

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggvegan

ggplot-based plots for vegan

git-demo

A very quick demo of Git for beginners

git-novice

Software Carpentry introduction to Git for novices.

gmrad

gmRAD: an integrated pipeline to call SNP genotypes across a hybrid population for genetic mapping with RADseq data

gneiss

compositional data analysis and visualization toolbox

gofeat

GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data

goodreads_visualization

A Jupyter notebook where I play with my Goodreads data

griffithlab_rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.