I tried downloading bioformats-examples-master.zip and my Windows Defender quarantined it after it downloaded.

The attached screenshot is the entry in Event Viewer and you'll see bioformats-examples-master.zip referenced in the middle of the screen in blue text.

I will be seeing some cyber security folks later tomorrow afternoon and see what they have to say.

See ome/bioformats#3992 (review)

See ome/www.openmicroscopy.org#514 for the original discussion

LIke other OME projects, the goal of the Bio-Formats examples maintained in this repository is to illustrate the usage of the API in a manner that makes it as re-usable as possible in documentation, tutorials.

To achieve this, this issue proposes to relicense this component from the current GPL-2 to BSD-2. In addition to the source code relicensing, the project dependency could be simply reduced to formats-bsd.

The list of developers who have made significant contributions to the source files has been computed from git log --pretty=format:"%an%x09" --follow src/main/ | sort | uniq:

• @sbesson
• @dgault
• @jburel
• @rleigh-codelibre
• @melissalinkert
• @jamesmyatt

Could everyone confirm they are happy for their contributions to be relicensed under the terms of the BSD-2 license?

Add CI test for matlab example.

Issues identified as part of embl-cba/plateviewer#8

Executing mvn generates a pyramidal OME-TIFF with identical dimensions across sub-resolutions.

sbesson@ls30630:bio-formats-examples (master) $ showinf -noflat -resolution 0 target/classes/generatedPyramid.ome.tiff 
Checking file format [OME-TIFF]
Initializing reader
OMETiffReader initializing target/classes/generatedPyramid.ome.tiff
Reading IFDs
Populating metadata
Initialization took 0.07s

Reading core metadata
filename = /opt/ome/bio-formats-examples/target/classes/generatedPyramid.ome.tiff
Used files = [/opt/ome/bio-formats-examples/target/classes/generatedPyramid.ome.tiff]
Series count = 1
Series #0 :
	Resolutions = 4
		sizeX[0] = 1024
		sizeX[1] = 1024
		sizeX[2] = 1024
		sizeX[3] = 1024
	Image count = 1
	RGB = false (1) 
	Interleaved = false
	Indexed = false (false color)
	Width = 1024
	Height = 1024
	SizeZ = 1
	SizeT = 1
	SizeC = 1
	Tile size = 1024 x 1024
	Thumbnail size = 128 x 128
	Endianness = intel (little)
	Dimension order = XYZCT (certain)
	Pixel type = uint8
	Valid bits per pixel = 8
	Metadata complete = true
	Thumbnail series = false
	-----
	Plane #0 <=> Z 0, C 0, T 0


Reading pixel data (0-0)
	Read 1/1 planes (100%)
[done]
0.387s elapsed (387.0ms per plane)

Launching image viewer

Reading global metadata

Reading metadata

Although valid from a specification perspective, this is clearly not the intent of this example and the pixel data is clear not expected for sub-resolutions