cctyper dies with missing files about crisprcastyper HOT 4 CLOSED

Hi Joseph

That's odd. How does your fasta headers look like?

from crisprcastyper.

They look like this, and that's probably these "/" that cause the issue, I'll try editing and run again :'(

>m64241e_210617_232502/20/ccs
>m64241e_210617_232502/6686011/ccs
>m64241e_210617_232502/14681679/ccs
>m64241e_210617_232502/22611689/ccs
>m64241e_210617_232502/30213142/ccs
>m64241e_210617_232502/37619981/ccs
>m64241e_210617_232502/45156585/ccs
>m64241e_210617_232502/52627283/ccs
>m64241e_210617_232502/60162622/ccs
>m64241e_210617_232502/67700160/ccs

from crisprcastyper.

Yeah, definitely the '/' that are messing things up.

from crisprcastyper.

I'm glad you like the tool!
But I had some issues about minced.
Traceback (most recent call last): File "/project/hz/.conda/envs/AcaFinder/bin/cctyper", line 91, in crispr_obj.run_minced() File "/project/hz/.conda/envs/AcaFinder/lib/python3.8/site-packages/cctyper/minced.py", line 75, in run_minced subprocess.run(['minced', File "/project/hz/.conda/envs/AcaFinder/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/project/hz/.conda/envs/AcaFinder/lib/python3.8/subprocess.py", line 858, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/project/hz/.conda/envs/AcaFinder/lib/python3.8/subprocess.py", line 1720, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'minced'

from crisprcastyper.