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kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases down to 20-30% sequence identity. kClust generates a clustering where each cluster is represented by its longest sequence (representative sequence).

Makefile 0.33% C++ 57.77% C 38.82% Objective-C 3.08%

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kclust's Issues

Please fix the bugs in mkaln.cpp

When I recompile the kCluster binaries by using g++, I come across some problems.

The first one is that the boost library has change from -lboost_regex-mt to -lboost_regex, and I have fix it by changing Makefile.

The second one is the redeclaration of 'int i' in mkaln.cpp. I find that you first declare "size_t i" in for loop and then you declare int i = 1 in the for body. So how to fix the second bug? Can I fix it by deleting "int i = 1"?

The errrors:
mkaln.cpp:85:7: error: redeclaration of 'int i'
int i = 1;
mkaln.cpp:295:7: error: redeclaration of 'int i'
int i = 1;

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