Topic: kraken2 Goto Github
Some thing interesting about kraken2
Some thing interesting about kraken2
kraken2,A Shiny app for taxonomic abundance visualization
User: acvill
Home Page: https://acvill.shinyapps.io/bracken_plot/
kraken2,A simple nextflow pipeline for running kraken2 and bracken in a docker container
User: angelovangel
kraken2,An intuitive tutorial on Kraken2 metagenomic analysis
User: asadprodhan
kraken2,A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
User: danisven
kraken2,Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all
User: eric9n
kraken2,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
kraken2,🦠Course project in Bioinformatics Institute 2023-2024
User: iliapopov17
kraken2,Calculate confidence scores from Kraken2 output
User: ivarz
kraken2,A LatchBio workflow for running Kraken2
User: jvfe
Home Page: https://console.latch.bio/explore/82006/info
kraken2,A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.
Organization: ksumngs
Home Page: https://ksumngs.github.io/v-met
kraken2, A Docker image for the conifer utility.
User: midnighter
kraken2,A pipeline to investigate horizontal gene transfer from NGS data
Organization: nf-core
Home Page: https://nf-co.re/hgtseq
kraken2,An awesome BCL demultiplexing and FastQ quality-control pipeline
Organization: openomics
Home Page: https://openomics.github.io/weave/
kraken2,Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
User: pfeiferd
kraken2,This script filters low abundant reads from Bracken outputs for downstream analyses
User: raymondkiu
kraken2,#Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python scripts used below are also in your PATH #Download PAFTOL V2.0 Angio353 genes from Kew #After building the DB, the scripts kraken2paired.py and top_taxa.py can be used to identify taxonomy of unknown samples. #e.g. #kraken2paired.py "reads/*.fastq" kraken_results/ 0 24 kraken2_paftol2/ #top_taxa.py "kraken_results/*" kraken.out
Organization: royal-botanic-gardens-victoria
kraken2,Kraken2.0.7-beta edited
User: savytskanatalia
kraken2,Creates a simple OTU table from Kraken2 report.
User: sipost1
kraken2,a simple python script for "grafting" on novel sequences to a custom Kraken2 database
User: zheludev
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