Topic: taxonomic-classification Goto Github
Some thing interesting about taxonomic-classification
Some thing interesting about taxonomic-classification
taxonomic-classification,Sequence based 16S rRNA Taxonomic classifier using MLP
User: ali-kishk
taxonomic-classification,Autoregression model for predicting results on metrics and Cohort analysis.
User: axzxp
taxonomic-classification,This library provides a way to parse, manipulate and analyze ICB and GICS Codes.
User: batman32168
taxonomic-classification,Prepare a report for taxonomic assignment based on 16S rRNA sequences, using BLAST.
Organization: bccdc-phl
taxonomic-classification,Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Organization: bioinformatics-centre
Home Page: http://kaiju.binf.ku.dk
taxonomic-classification,Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
Organization: bioinfouqam
taxonomic-classification,ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
User: bluenote-1577
taxonomic-classification,A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
Organization: dalmolingroup
Home Page: https://dalmolingroup.github.io/euryale/
taxonomic-classification,Static site generator "Databaseless" CMS: Content is just (git friendly) markdown with multidimensional topic/tags/taxonomy extensions that both humans and AI will appreciate.
User: earizon
Home Page: https://earizon.github.io/txt_world_domination/
taxonomic-classification,PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer
User: emiliomastriani
taxonomic-classification,Pipeline for 3rd Generation sequencing data from MinION
User: emiliomastriani
taxonomic-classification,The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
Organization: exabiome
Home Page: https://gtnet.readthedocs.io
taxonomic-classification,Forecasting the Adoption Process of Technology Using ML Methods
User: faridnec
taxonomic-classification,CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
User: flefler
taxonomic-classification,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
taxonomic-classification,MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
Organization: hku-bal
taxonomic-classification,Fast and space-efficient taxonomic classification of long reads
User: jensuweulrich
taxonomic-classification,This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
User: johannabosch
taxonomic-classification,Processing modules of the metagenomic visualization tool, MetaG.
User: kaymers
taxonomic-classification,Tag and recommend Python exercises based on algorithmic features
User: laowantong
Home Page: https://laowantong.github.io/paroxython/index.html
taxonomic-classification,Evaluation of Statistical Linear Models for Genome Virus Classification
User: maremita
taxonomic-classification,Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
User: mbhall88
Home Page: https://doi.org/10.1093/gigascience/giae010
taxonomic-classification,Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Organization: metagenopolis
taxonomic-classification,Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
Organization: microucph
Home Page: https://microucph.github.io/amplicon_data_analysis/
taxonomic-classification,This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
User: millanp95
taxonomic-classification,Next Generation Phylogenetic Microbiome Analysis Framework
User: mmtechslv
taxonomic-classification,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
taxonomic-classification,A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
Organization: nf-core
Home Page: https://nf-co.re/detaxizer
taxonomic-classification,Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Organization: nf-core
Home Page: https://nf-co.re/taxprofiler
taxonomic-classification,Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
User: peterk87
taxonomic-classification,Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Organization: phylo42
taxonomic-classification,Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Organization: phylo42
taxonomic-classification,Massively parallel phylogenetic placement of genetic sequences
User: pierrebarbera
taxonomic-classification,:notebook: Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz
User: rekyt
Home Page: https://doi.org/10.1111/2041-210X.13802
taxonomic-classification,Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
User: roseedwin
taxonomic-classification,A script to check fungus names for the most up to date nomenclature according to Species Fungorum 🍄
User: rowena-h
taxonomic-classification,process raw reads from ubiome
User: rwst
taxonomic-classification,Accurate metagenomic profiling && Fast large-scale sequence/genome searching
User: shenwei356
Home Page: https://bioinf.shenwei.me/kmcp
taxonomic-classification,Create BIOM-format tables (http://biom-format.org) from CLARK output (http://clark.cs.ucr.edu/) for use with downstream tools such as UniFrac, iTol (itol.embl.de), or PhyloToAST (phylotoast.org), PhyloToAST (http://phylotoast.org).
User: smdabdoub
taxonomic-classification,Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
User: smdabdoub
taxonomic-classification,Implementation of a flexible methodology for research software classification
Organization: softwareunderstanding
taxonomic-classification,A formal taxonomy to classify JSON documents based on their size, type of content, characteristics of their structure and redundancy criteria.
Organization: sourcemeta
Home Page: https://sourcemeta.github.io/json-taxonomy
taxonomic-classification,Quickly search, compare, and analyze genomic and metagenomic data sets.
Organization: sourmash-bio
Home Page: http://sourmash.readthedocs.io/en/latest/
taxonomic-classification,Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Organization: steineggerlab
taxonomic-classification,Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Organization: treangenlab
taxonomic-classification,Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
User: v-z
Home Page: https://github.com/V-Z/sondovac/wiki/
taxonomic-classification,Awesome research paper on taxonomy (information retrieval). Study notes about their contributions, methods, and results.
User: vincentgaohj
taxonomic-classification,PyTorch implementation of Metric-Guided Prototype Learning for hierarchical classification.
User: vsainteuf
taxonomic-classification,The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.
User: xapple
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