Topic: fastqc Goto Github
Some thing interesting about fastqc
Some thing interesting about fastqc
fastqc,Slurm scripts for analyzing bulk Cutandtag data
User: adityamahadevaniyer
fastqc,Tools to analyze fasta or fastaq files with python.
User: alex-merge
fastqc,A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
User: angelovangel
fastqc,A simple fastp-MultiQC nextflow pipeline
User: angelovangel
fastqc,The repository contain directories of projects done during the bioinformatics degree program
User: anita-brzoza
fastqc,Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
User: bryanabuchery
fastqc,FAstqc DAta PArser - A minimal parser to parse FastQC output data.
User: chillaranand
fastqc,Demultiplexing pipeline for sequencing data
User: csawye01
fastqc,Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
User: digo4
fastqc,A quality control tool for FASTQ files written in rust
Organization: fastqc-rs
fastqc,Report the mean quality score per base from the output of FastQC.
User: firewater
fastqc,Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.
User: genomicamicrob
fastqc,Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
Organization: gustaveroussy
fastqc,Count your fastq-formatted rna-seq reads with Salmon
Organization: gustaveroussy
fastqc,Quality Control, Mapping and Reads Count for RNA-Seq Analysis
User: hanielcedraz
fastqc,A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
Organization: ims-bio2core-facility
fastqc,Exploring Bioinformatics pipelines
User: ineelhere
Home Page: https://ineelhere.github.io/bioinformatics/
fastqc,Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
User: julianneyang
fastqc,Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
User: kalilamali
fastqc,Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
User: kashiff007
fastqc,A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
User: kevin-wamae
fastqc,Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality
User: lvn3668
fastqc,An R package to parse and manage text output of the sequencing quality control utility (fastQC)
User: mahshaaban
fastqc,Repository for variant calling utilizing bioinformatics tools and databases
User: mansikath
fastqc,Build Docker container for FastQC software and (optionally) convert to Apptainer/Singularity.
User: mattgalbraith
fastqc,Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
User: mehdimerbah
fastqc,Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
User: mnievesc
fastqc,Bulk Rna-seq Analysis
User: moha-cm
Home Page: https://moha-cm.github.io/RNAseq-Analysis/
fastqc,Installation and usage of FastQC for fastq file quality control analysis.
User: morgan-feuz
fastqc,A python package for working with inputs to and outputs from the toil-rnaseq pipeline
User: nbay13
fastqc,A pipeline to investigate horizontal gene transfer from NGS data
Organization: nf-core
Home Page: https://nf-co.re/hgtseq
fastqc,A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
Organization: norwegianveterinaryinstitute
fastqc,Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.
User: orangepomeranian
fastqc,
User: oxpeter
fastqc,RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Organization: pavlidislab
fastqc,An interactive web tool for quality control of DNA sequencing data
User: robertaboukhalil
Home Page: https://fastq.bio
fastqc,Snakemake workflow for Salmon quantification and FastQC quality controls
User: tdayris-perso
fastqc,Map and post-process your bams for SNP calling
User: tdayris-perso
fastqc,Perform basic QC over sequenced data
User: tdayris
fastqc,A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
User: vickylaram
fastqc,This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
User: yejg2017
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