Topic: peptides Goto Github
Some thing interesting about peptides
Some thing interesting about peptides
peptides,GPT powered plugin & fine tuned model for natural language interaction with in-silico drug simulators and prediction of drug properties
User: abdullateefv
peptides,Classical force-field for peptides containing 4-fluorinated proline residues (or any canonical peptide). Includes a proline ring pucker correction
User: ajaymur91
peptides,
User: andrewrech
peptides,Python toolkit and package for analyzing enzyme activity data
User: avaamini
peptides,Collects software dedicated to predicting specific properties of peptides
Organization: biogenies
Home Page: https://biogenies.info/peptide-prediction-list/
peptides,R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
User: brandonsie
Home Page: https://brandonsie.github.io/epitopefindr/
peptides,DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
Organization: compomics
Home Page: https://iomics.ugent.be/deeplc
peptides,Collisional cross-section prediction for modified peptides
Organization: compomics
peptides,Dataset of 86.000 peptides and their binding degree, that can be used to predict, whether a peptide is binded or not.
User: ditekunov
peptides,A set of different models, that predict the degree of binding of peptide proteins.
User: ditekunov
peptides,An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
User: dosorio
peptides,Interactive Shiny application for tidyproteomics
User: ejmackrell
Home Page: https://ejmackrell.github.io/tidyproteomics-interactive/
peptides,Python script to find all instances of an amino acid sequence motif in protein structures and parse their internal coordinates
User: falategan
Home Page: https://motif-conformation-finder.readthedocs.io/en/latest/
peptides,Identifying peptide-receptor interactions using AlphaFold-Multimer
User: fteufel
Home Page: https://pubs.acs.org/doi/10.1021/acs.jcim.3c00378
peptides,Repo for SARS-CoV-2 Mpro modelling results; see https://bitly.com/peptibitors for the bioRxiv preprint.
User: gmm
peptides,Masked peptides for low-data peptide drug discovery (BiB 2023)
User: horsepurve
peptides,Deep (Transfer) Learning for Peptide Retention Time Prediction
User: horsepurve
peptides,A library for fast peptide fragment ion generation
Organization: ikcgroup
peptides,Suite of Rust crates related to amino acids.
User: jeanmanguy
peptides,Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.
User: joseph-ellaway
peptides,PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
User: leonjessen
peptides,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
peptides,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
peptides,This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
User: lkytal
peptides,Search, molecular modeling and molecular docking of peptides.
User: lucaspalmeira
peptides,Alternative to the native gmx saltbr Gromacs function for estimating the occurance of salt bridges in peptides and proteins over a simlation trajectory
User: magnusbertelsen
peptides,🧬 Toolkit for generating various numerical features of protein sequences
User: nanxstats
Home Page: https://nanx.me/protr/
peptides,Identify and quantify MHC eluted peptides from mass spectrometry raw data
Organization: nf-core
Home Page: https://nf-co.re/mhcquant
peptides,Pipeline for small peptide discovery
User: noepozzan
Home Page: https://zavolan.biozentrum.unibas.ch/
peptides,A tool for mass spectrometry data analysis.
User: novak-jiri
Home Page: https://ms.biomed.cas.cz/cyclobranch/
peptides,Major Histocompatibility Complex (MHC) Binding Affinity Prediction
User: nstrodt
peptides,PARCE version 1.0
Organization: parce-project
peptides,A spectacularly simple package for working with peptide sequences.
User: pgarrett-scripps
Home Page: https://peptacular.readthedocs.io/en/latest/index.html
peptides,A peptide fragment ion calculator made with streamlit
User: pgarrett-scripps
Home Page: https://peptidefragmenter.streamlit.app/
peptides,Protein Cleaver is a versatile tool for protein analysis and digestion.
User: pgarrett-scripps
Home Page: https://proteincleaver.streamlit.app/
peptides,The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Organization: pmartr
Home Page: https://pmartr.github.io/pmartR/
peptides, pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:
Organization: pymbe-dev
Home Page: https://pymbe-dev.github.io/pyMBE/pyMBE.html
peptides,AntiCP2 is an updated version of AntiCP developed for predicting, designing and scanning anticancer peptides.
User: raghavagps
Home Page: http://webs.iiitd.edu.in/raghava/anticp2/
peptides,Prediction therapeutic peptides and proteins using machine learning techniques
User: raghavagps
Home Page: http://webs.iiitd.edu.in/raghava/thppred
peptides,Script to manipulate BILN format and convert it to HELM (and viceversa)
User: rochoa85
peptides,Python package for site-directed spin labeling of proteins
Organization: stolllab
Home Page: https://stolllab.github.io/chiLife/
peptides,Automated peptide simulation tool with gromacs, gromacswrapper, plumed
Organization: ur-whitelab
peptides,Python framework for Deep Learning in Proteomics
Organization: wilhelm-lab
Home Page: https://dlomix.readthedocs.io/
peptides,Proteomics Mass Spectrometry Datasets for Machine Learning
Organization: wilhelm-lab
Home Page: https://wilhelm-lab.github.io/PROSPECT/
peptides,release version
Organization: xryanglab
peptides,Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
User: zmmason
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