Topic: ribosome-profiling Goto Github
Some thing interesting about ribosome-profiling
Some thing interesting about ribosome-profiling
ribosome-profiling,Repo for the files needed for embedding mappingQC in the Galaxy environment
Organization: biobix
ribosome-profiling,uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
User: biochemistry1-ffm
ribosome-profiling,Fast data processing for ribosome footpring profiling experiments from bam files
User: celalp
ribosome-profiling,Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).
User: cgob
ribosome-profiling,Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
User: fallerlab
ribosome-profiling,workshop2020: Basic and advanced bioinformatics for RegenerationNEXT
User: jianhong
Home Page: https://jianhong.github.io/workshop2020/
ribosome-profiling,pilot pipeline that includes tool containerization
User: jvandinter
ribosome-profiling,Comparison of the ability of open reading frames to recruit ribosomes within individual transcripts
User: lcscs12345
ribosome-profiling,Analyze ribosome profiling for organisms have ncbi annotation
Organization: lewislabucsd
ribosome-profiling,Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
Organization: mpusp
ribosome-profiling,Pipeline for Ribosome Profiling Data
Organization: ribosomeprofiling
ribosome-profiling,We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
User: rickgelhausen
ribosome-profiling,Mathematica notebook to compare methods of ML for ribosom density on mRNA prediction
User: rretkute
ribosome-profiling,Website source code for analysis of ribosome / polysome profiling
Organization: ruggleslab
ribosome-profiling,Snakemake pipeline for Ribo-Seq analysis
User: saketkc
ribosome-profiling,Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
User: saketkc
Home Page: https://riboraptor.readthedocs.io/
ribosome-profiling,Riborex: Fast and flexible identification of differential translation from Ribo-seq data
Organization: smithlabcode
ribosome-profiling,A tool for accurately detecting actively translating ORFs from Ribo-seq data
Organization: smithlabcode
Home Page: http://doi.org/djv4
ribosome-profiling,Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data
Organization: smithlabcode
ribosome-profiling,Workflow for Ribosome profiling data start and stop codon analysis.
User: sudeepsahadevan
ribosome-profiling,A comprehensive pipeline for Ribo-seq data analysis
User: sunyumail93
ribosome-profiling,Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.
User: tjh48
Home Page: https://bioconductor.org/packages/release/bioc/html/riboSeqR.html
ribosome-profiling,machine learning algorithm for predicting ribosome densities at the gene level in different amino acid deprivation conditions
User: vam-sin
ribosome-profiling,RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
User: vimalkvn
ribosome-profiling,release version
Organization: xryanglab
ribosome-profiling,Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A
Organization: xryanglab
Home Page: https://www.nature.com/articles/s41467-023-36290-w
ribosome-profiling,Tools for ribosome profiling
User: xuepengsun
ribosome-profiling,Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
User: zhongyiwang1
ribosome-profiling,Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
User: zhpn1024
Home Page: http://dx.doi.org/10.1038/s41467-017-01981-8
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