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bamcb2rg

BAM utility that swaps the CB (cell barcode) and RG tags, such that each cell is considered a sample in variant calling

bamtools

C++ API & command-line toolkit for working with BAM data

bash_kernel

A bash kernel for IPython

bbs_meeting_2015

Programme, notes, slides etc. related to BBS meeting prior to MapNet2015

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bcolz

A columnar data container that can be compressed.

bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

bioconda-recipes

Conda recipes for the bioconda channel.

biofmtspecimens

A collection of bioinformatics file format specimens to test against

biofuzz

Broken files in various bioinformatic formats with which one can fuzz test parsers

biomisc

Misc bioinformatics tools

biopipes

Python module to make writing Ipython analysis workflows easier

biopython

Official git repository for Biopython (converted from CVS)

bioscripts

A Collection of Bioinformatic Scripts

biosequences.jl

Biological sequences for the julia language!

biosymbols.jl

A small package introducing nucleic and amino acid primitive types.

biozsh

the z in bioinformatics

bitarray

C bit array structs and methods

blindschleiche

Misc sequence tools in python

blogv2

bloomfilters.jl

Bloom filters in Julia

bloomtree

bloscpack

Command line interface to and serialization format for Blosc

borg

Deduplicating archiver with compression and authenticated encryption.

boringld

bufferedstreams.jl

Fast composable IO streams

buildexecutable.jl

Build a standalone executables from a Julia script

bullet-train.zsh

:bullettrain_side: An oh-my-zsh shell theme based on the Powerline Vim plugin