Name: Dr. K. D. Murray
Type: User
Company: Max Planck Institut für Entwicklungsbiologie, Tübingen
Bio: Postdoctoral Fellow in Plant-pathogen Evolutionary Genomics.
Consultant in Bioinformatics.
Formerly at ANU, Canberra
Location: Tübingen, DE
Blog: https://kdmurray.id.au
Dr. K. D. Murray's Projects
problems from rosalind.info
Sequence Alignment-Free Tool
Take photos of seeds/leavs in bags, automatically scanning in QR codes
phylogenetics for SARS-CoV-2
search, collect, and read the scientific literature.
Core objects, functions and statistics for working with biological data in Python.
Biological simulation in python
Image Processing SciKit (Toolbox for SciPy)
a simple read-only sequence database, designed for short reads
Misc scripts for sysadmin-ish activities
A 3'-end adapter contaminant trimmer
Debian package for Vince Buffalo's Scythe
Succinct Data Structure Library 2.0
Open Source Plant Accession Collection Database
Sequence simulator
SeqAn's official repository.
Small sequence analysis tools that don't deserve their own repos.
yet another NGS command
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
seqqs is a C program/library for gathering quality statistics from sequencing data
Toolkit for processing sequences in FASTA/Q formats
Windowed Adaptive Trimming for fastq files using quality
yet another simple static gallery generator
This is the development home of the workflow management system Snakemake. For general information, see
My snakemake wrappers