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Dr. K. D. Murray's Projects

saft icon saft

Sequence Alignment-Free Tool

sampler icon sampler

Take photos of seeds/leavs in bags, automatically scanning in QR codes

sciencefair icon sciencefair

search, collect, and read the scientific literature.

scikit-bio icon scikit-bio

Core objects, functions and statistics for working with biological data in Python.

screed icon screed

a simple read-only sequence database, designed for short reads

scripts icon scripts

Misc scripts for sysadmin-ish activities

scythe icon scythe

A 3'-end adapter contaminant trimmer

seedbank icon seedbank

Open Source Plant Accession Collection Database

seqan icon seqan

SeqAn's official repository.

seqhax icon seqhax

Small sequence analysis tools that don't deserve their own repos.

seqlib icon seqlib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

seqqs icon seqqs

seqqs is a C program/library for gathering quality statistics from sequencing data

seqtk icon seqtk

Toolkit for processing sequences in FASTA/Q formats

sickle icon sickle

Windowed Adaptive Trimming for fastq files using quality

sigal icon sigal

yet another simple static gallery generator

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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