Name: Dr. K. D. Murray
Type: User
Company: Max Planck Institut für Entwicklungsbiologie, Tübingen
Bio: Postdoctoral Fellow in Plant-pathogen Evolutionary Genomics.
Consultant in Bioinformatics.
Formerly at ANU, Canberra
Location: Tübingen, DE
Blog: https://kdmurray.id.au
Dr. K. D. Murray's Projects
Pandoc templates meet journal latex templates
📚 Parameterize, execute, and analyze notebooks
5'PARE phasing
Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
Rescue index read from a PARE run whose indexing failed.
PhD-related Presenations
Useful stuff for building distributed pipelines and data workflows
The redesigned PODD
Population genetics notes
A pipeline to simulate a series of populations, and then simulate reads from a resequencing experiment of each population.
Use RMarkdown to generate PDF Conference Posters via HTML
Off-The-Record Protocol Implementation in Python
PyCogent: Official repository for software and unit tests
Fork, which allows installation using pip. No support. Use it as it is ;-)
pymo organises your music based on media tags
A pure-python next-gen sequencing quality control library, and soon to be command line tool
Python Progressbar
Python installation manager supporting CPython, Stackless, PyPy and Jython
QR decoder library
Scripts for analysis of reduced-representation sequencing (GBS, RADseq)
Configure and install group-wide software modules on Raijin using ansible
xe2 modules on raijin
A powerful cross-platform raw photo processing program
Here is the material for a workshop series about biostatistics in R. Topics will include data management, a lot of (generalized) linear (mixed) models, bayesian and frequentist principles, simulations, multi-model inference... or whatever you ask me for
Redshift adjusts the color temperature of your screen according to your surroundings. This may help your eyes hurt less if you are working in front of the screen at night.
fork of https://git.ist.ac.at/harald.ringbauer/IBD-Analysis
Extremely fast tool to remove duplicates and other lint from your filesystem