Topic: fastq Goto Github
Some thing interesting about fastq
Some thing interesting about fastq
fastq,An efficient FASTQ manipulation suite
User: alastair-droop
fastq,Parse and process FASTA and FASTQ formatted files of biological sequences.
Organization: biojulia
Home Page: https://biojulia.dev
fastq,Fast and accurate sequence demultiplexing
Organization: biosails
fastq,Viral genomics analysis pipelines
Organization: broadinstitute
fastq,Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
User: cartoonist
fastq,Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
User: daniel-liu-c0deb0t
fastq,A quality control tool for FASTQ files written in rust
Organization: fastqc-rs
fastq,Grep for FASTQ files
Organization: fulcrumgenomics
fastq,A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Organization: genetalks
fastq,Bioinformatics library in Kotlin
Organization: jetbrains-research
fastq,Versatile FASTA/FASTQ demultiplexer.
User: jfjlaros
fastq,Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
User: kirillkryukov
Home Page: http://kirill-kryukov.com/study/naf/
fastq,FastQC port to Qt5: A quality control tool for high throughput sequence data.
Organization: labsquare
fastq,Efficient handling of FASTQ files from Python
User: lgautier
Home Page: https://lgautier.github.io/fastq-and-furious/
fastq,My bioinfo toolbox
User: lpryszcz
Home Page: http://bioinfoexpert.com/
fastq,An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and settle reads interleaving.
User: mazzalab
fastq,Benchmarking FASTQ compression with 'mature' compression algorithms
User: mbhall88
fastq,Randomly subsample sequencing reads or alignments
User: mbhall88
Home Page: https://doi.org/10.21105/joss.03941
fastq,Simple FASTQ quality assessment using Python
User: mdshw5
Home Page: https://pypi.python.org/pypi/fastqp
fastq,Simulate metagenomic short reads from one or more populations.
Organization: merenlab
fastq,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
fastq,ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
User: ncherric
Home Page: https://iliad.readthedocs.io/
fastq,NGLess: NGS with less work
Organization: ngless-toolkit
Home Page: https://ngless.embl.de
fastq,Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
User: nunofonseca
fastq,Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Organization: opengene
fastq,Please switch to https://github.com/OpenGene/defastq
Organization: opengene
fastq,Detect and visualize target mutations by scanning FastQ files directly
Organization: opengene
fastq,An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
User: paulranum11
fastq,The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Organization: seqan
Home Page: https://www.seqan.de
fastq,A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
User: shenwei356
Home Page: https://bioinf.shenwei.me/seqkit
fastq,Access and Format Single-cell RNA-seq Datasets from Public Resources
User: showteeth
Home Page: https://showteeth.github.io/scfetch/
fastq,Detecting contamination in NGS data and multi-species analysis
User: stevenwingett
Home Page: https://stevenwingett.github.io/FastQ-Screen/
fastq,Command line utility for manipulating Illumina-generated FASTQ files.
Organization: stjude-rust-labs
fastq,:rocket: seqfu - Sequece Fastx Utilities
User: telatin
Home Page: https://telatin.github.io/seqfu2
fastq,Versatile open-source tool for microbiome analysis
User: torognes
fastq,:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
User: tseemann
fastq,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
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