Topic: genome-annotation Goto Github
Some thing interesting about genome-annotation
Some thing interesting about genome-annotation
genome-annotation,Viral genome assemble and characterisation
User: agudeloromero
genome-annotation,A high-performance BED-to-GTF converter written in Rust
User: alejandrogzi
genome-annotation,
Organization: biojulia
genome-annotation,A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
User: cfarkas
genome-annotation,B73Ab10 genome assembly methods
Organization: dawelab
genome-annotation,Desktop tool for microbial genome annotation and gene detection
User: dmnfarrell
genome-annotation,Genome Annotation Without Nightmares
User: enormandeau
genome-annotation,Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Organization: ga4gh
Home Page: http://ga4gh.org
genome-annotation,:whale: Galaxy Docker Image with Tools for Genome Annotation
Organization: galaxy-genome-annotation
genome-annotation,A collaborative notebook for genes and genomes
Organization: genenotebook
Home Page: http://genenotebook.github.io/
genome-annotation,Efficiently keep track of changes to genomes
Organization: ginkgobioworks
Home Page: https://pypi.python.org/pypi/edge-genome
genome-annotation,JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
Organization: gmod
Home Page: http://jbrowse.org
genome-annotation,Nextflow pipeline for genome annotation of protein-coding genes
Organization: guigolab
genome-annotation,A robust Python tool for the annotation of 3’ UTRs
User: haessar
Home Page: https://doi.org/10.1093/bioinformatics/btad112
genome-annotation,TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Organization: hillerlab
genome-annotation,TREDPARSE: HLI Short Tandem Repeat (STR) caller
Organization: humanlongevity
genome-annotation,🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
User: kuanhao-chao
Home Page: http://ccb.jhu.edu/lifton
genome-annotation,Papillomavirus genome annotation tool
Organization: kvd-lab
genome-annotation,Workflow for identifying and classifying homologous gene/protein sequences
User: laelbarlow
genome-annotation,Genome browser to visualize and analyze genomic data
User: lebinh190998
Home Page: https://www.youtube.com/watch?v=jPPwD95kp28&ab_channel=BinhLe
genome-annotation,Python implementation of barrnap (Bacterial ribosomal RNA predictor)
User: moshi4
genome-annotation,DEPRECATED: Use Cenote-Taker 3 instead
User: mtisza1
genome-annotation,Tools to annotate genomes using long read transcriptomics data
Organization: nanoporetech
genome-annotation,Pipeline for annotating genomes using long read transcriptomics data with pinfish
Organization: nanoporetech
genome-annotation,Toolkit for preparing genomes for submission to NCBI
Organization: naturalis
genome-annotation,Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Organization: nbchub
Home Page: https://github.com/NBChub/bgcflow/wiki
genome-annotation,A set of workflows written in Nextflow for Genome Annotation.
Organization: nbisweden
genome-annotation,Read Assembly and Annotation Pipeline Tool
Organization: ncbi
genome-annotation,Eukaryotic Genome Annotation Pipeline
User: nextgenusfs
Home Page: http://funannotate.readthedocs.io
genome-annotation,Pipeline for the identification of (coding) gene structures in draft genomes.
Organization: nf-core
Home Page: https://nf-co.re/genomeannotator
genome-annotation,Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
User: oschwengers
genome-annotation,Extensive de-novo TE Annotator
User: oushujun
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
genome-annotation,A parallel wrapper for LTR_FINDER
User: oushujun
genome-annotation,LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
User: oushujun
Home Page: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
genome-annotation,Donut: automated Circos visualization of multiple fasta files within a docker image
User: philippmuench
genome-annotation,Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
User: rcavalcante
genome-annotation,Genomic Data Retrieval with R
Organization: ropensci
Home Page: https://docs.ropensci.org/biomartr
genome-annotation,Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣
User: rowena-h
genome-annotation,A fully automated gene annotator from RNA-Seq expression data
User: sagnikbanerjee15
genome-annotation,Example client programs for Saphetor's VarSome annotation API
Organization: saphetor
Home Page: https://api.varsome.com
genome-annotation,A tool for discovering transposable elements and describing patterns of genome evolution
User: sestaton
genome-annotation,A toolkit for annotation of transposable element families from unassembled sequence reads
User: sestaton
Home Page: http://sestaton.github.io/Transposome
genome-annotation,GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Organization: smrucc
Home Page: http://gcmodeller.org
genome-annotation,Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
User: tariqdaouda
Home Page: http://pygeno.iric.ca
genome-annotation,Earl Grey: A fully automated TE curation and annotation pipeline
User: tobybaril
genome-annotation,:zap: :aquarius: Rapid prokaryotic genome annotation
User: tseemann
genome-annotation,defusion
User: wjidea
Home Page: https://wjidea.github.io/defusion/
genome-annotation,convert various features into a GFF-like file for use in genome browsers
User: wrf
genome-annotation,LRSDAY: Long-read Sequencing Data Analysis for Yeasts
User: yjx1217
Home Page: https://yjx1217.github.io/Yeast_PacBio_2016/software/
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