Topic: genome Goto Github
Some thing interesting about genome
Some thing interesting about genome
genome,machine learning for genomic variants
Organization: aehrc
Home Page: http://bioinformatics.csiro.au/variantspark
genome,Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
User: althonos
Home Page: https://pyrodigal.readthedocs.org
genome,Next generation sequencing reads de novo assembler.
User: aquaskyline
genome,:microscope: Assemble large genomes using short reads
Organization: bcgsc
Home Page: http://www.bcgsc.ca/platform/bioinfo/software/abyss
genome,🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Organization: bcgsc
genome,Nanopore sequence read simulator
Organization: bcgsc
genome,karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
User: bernatgel
Home Page: https://bernatgel.github.io/karyoploter_tutorial/
genome,A package for designing compact and comprehensive capture probe sets.
Organization: broadinstitute
genome,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
genome,Viral genomics analysis pipelines
Organization: broadinstitute
genome,An efficient index for the colored, compacted, de Bruijn graph
Organization: combine-lab
genome,HTML5 scrollable genome browser
Organization: decipher-genomics
Home Page: https://genoverse.org/
genome,A Nextflow workflow to generate lift over files for any pair of genomes
Organization: evotools
Home Page: https://nf-lo.readthedocs.io/
genome,Copy Number Variation
User: flowhub-team
genome,Whole Genome Sequencing analysis, WGS analysis
User: flowhub-team
genome,Genome annotation with AUGUSTUS
Organization: gaius-augustus
Home Page: http://bioinf.uni-greifswald.de/webaugustus/
genome,A visualization grammar and GPU-accelerated toolkit for genomic data
Organization: genome-spy
Home Page: http://genomespy.app/
genome,GenomeTools genome analysis system.
Organization: genometools
Home Page: http://genometools.org
genome,Dotplot large Genomes in an Interactive, Efficient and Simple way
Organization: genotoul-bioinfo
Home Page: http://dgenies.toulouse.inrae.fr
genome,DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Organization: google
genome,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
genome,Scientific Large Language Models: A Survey on Biological & Chemical Domains
Organization: hicai-zju
Home Page: http://scimind.ai/resource
genome,parallelized blat with multi-threads support
User: icebert
Home Page: http://icebert.github.io/pblat/
genome,🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
User: ivanseidel
genome,DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
User: jerryji1993
Home Page: https://doi.org/10.1093/bioinformatics/btab083
genome,Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
User: kennethreitz
Home Page: https://context.kennethreitz.org/
genome,[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Organization: magics-lab
genome,A genome browser that shows long reads and complex variants better
User: marianattestad
Home Page: http://genomeribbon.com
genome,Evaluating genome assemblies
User: mobinasri
genome,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
genome,A bioinformatic toolkit to align genome assemblies into pangenome graphs
Organization: neherlab
Home Page: https://neherlab.github.io/pangraph
genome,A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/eager
genome,Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
User: primaryobjects
genome,Genome Interval Arithmetic in R
Organization: rnabioco
Home Page: http://rnabioco.github.io/valr/
genome,Ein zentraler Bestandteil einer erfolgreichen Erregersurveillance ist das Verständnis der Verbreitung eines Erregers sowie seiner pathogenen Eigenschaften. Hierbei stellt das Wissen über das Erregergenom eine wichtige Informationsquelle dar. So erlaubt der Nachweis von Mutationen im Genom eines Erregers, Verwandtschaftsbeziehungen zu rekonstruie...
Organization: robert-koch-institut
Home Page: https://robert-koch-institut.github.io/SARS-CoV-2-Sequenzdaten_aus_Deutschland/
genome,Genomic Data Retrieval with R
Organization: ropensci
Home Page: https://docs.ropensci.org/biomartr
genome,MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
User: samtobam
genome,Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
User: tariqdaouda
Home Page: http://pygeno.iric.ca
genome,Identify and find telomeres, or telomeric repeats in a genome.
Organization: tolkit
genome,genes and genomes at your fingertips
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/genomepy/
genome,HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
User: zengxiaofei
genome,Workflow for Building Microsynteny Networks
User: zhaotao1987
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