Topic: gut-microbiome Goto Github
Some thing interesting about gut-microbiome
Some thing interesting about gut-microbiome
gut-microbiome,agp data to understand gut microbiome and childhood obesity.
User: baijinbing
gut-microbiome,Analysis and machine learning of high-dimensional data from the human gut microbiome.
User: brenoslivio
gut-microbiome,:microscope: Resources and notes on studying the human microbiome
User: erictleung
gut-microbiome,:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
User: franciscozorrilla
Home Page: https://franciscozorrilla.github.io/metaGEM/
gut-microbiome,Gut microbiome study (from 2000 to 2020)
User: gaospecial
Home Page: http://opendata.mr-gut.cn/gut-microbiome-20yrs/
gut-microbiome,An Android app to help people on the Specific Carbohydrate Diet (SCD) check if a food is allowed or not on the diet. This app is endorsed by Kirkton Press Limited, owner of the SCD trademark.
User: georgemclellan
Home Page: https://play.google.com/store/apps/details?id=com.development.georgemcl.eliminationdietapp&hl=en
gut-microbiome,Les études de métagénomiques mettent en évidence la présence et l'absence de différentes souches dans un microbiome. Pour résumer les abondances, on peut établir des graphes de co-occurence via : Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing data, Janko Tackmann, Joao Frederico Matias Rodrigues, Christian von Mering. bioRxiv 390195; doi : https://doi.org/10.1101/390195 Cependant, ces techniques reposent sur des corrélations et non sur des causalités. Elles ne permettent pas de comprendre les interactions entre organismes. Pour cela, il est important d'intégrer une autre dimension comme les informations contenues dans les réseaux métaboliques des bactéries. Pour cela, certaines bases de données existent : Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, et al. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. Nature Publishing Group; 2018 Mar;36(3):272-81 https://github.com/cdanielmachado/carveme/tree/master/carveme Ce projet vise à proposer une stratégie pour détecter les interactions via les échanges de métabolites via Flux Variability Analysis. La stratégie sera a tester sur des données de microbiotes intestinales fournies par le projet HMP.
User: gletroadec
gut-microbiome,Analysis and visualization of bioenergetic pathways in human gut microbiome datasets.
User: gntoulaveris
gut-microbiome,MicrobeRX
Organization: groningen-microbiome-centre
Home Page: https://microberx.readthedocs.io
gut-microbiome,Snakemake workflow to calculate in vivo bacterial replication rates from single time point metagenomics sequencing
User: hghezzi
gut-microbiome,Repository for reports and data of bioinformatics analyses from internship in Indonesia
User: iliapopov17
gut-microbiome,Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
User: jaeyunsung
gut-microbiome,My professional repository of project and publication data files in computational biology and data science.
User: jajohnso29
Home Page: https://scholar.google.com/citations?user=QoXD1CcAAAAJ&hl=en
gut-microbiome,Data and analysis code for the Indian gut microbiota study
User: microsud
gut-microbiome,MDPD - Microbiome Database of Pulmonary Diseases
Organization: pulmonomicslab
Home Page: http://bicresources.jcbose.ac.in/ssaha4/mdpd/
gut-microbiome,Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.
User: shuyib
gut-microbiome,This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.
User: val92loz
gut-microbiome,A computational tool for the prediction and identification of metabolites.
Organization: wishartlab-openscience
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