Topic: hi-c Goto Github
Some thing interesting about hi-c
Some thing interesting about hi-c
hi-c,TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Organization: 3dgenomes
hi-c,Lightweight converter between hic and cool contact matrices.
Organization: 4dn-dcic
hi-c,A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Organization: aidenlab
Home Page: http://aidenlab.org
hi-c,Paired Genomic Loci Tool Suite
User: billgreenwald
hi-c,Python reimplementation of hicrep with compatibility for sparse matrices
User: cmdoret
hi-c,Simple web browser to visualize HiC tracks
Organization: deeptools
hi-c,Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
Organization: dozmorovlab
Home Page: https://dozmorovlab.github.io/HiCcompare/
hi-c,Fast, flexible and extensible genome browser.
Organization: higlass
Home Page: http://higlass.io
hi-c,Builds a docker container wrapping higlass-server and higlass-client in nginx
Organization: higlass
hi-c,Server component for HiGlass that manages and serves tiled data
Organization: higlass
hi-c,A 3D genome data processing tutorial for ISMB/ECCB 2017
Organization: hms-dbmi
Home Page: https://hms-dbmi.github.io/3d-genome-processing-tutorial/
hi-c,Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Organization: hms-dbmi
Home Page: https://hms-dbmi.github.io/hic-data-analysis-bootcamp/
hi-c,Single-cell Hi-C data analysis toolbox
User: joachimwolff
Home Page: https://schicexplorer.readthedocs.io/
hi-c,Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Organization: koszullab
Home Page: https://chromosight.readthedocs.io
hi-c,Large genome reassembly based on Hi-C data, continuation of GRAAL
Organization: koszullab
hi-c,Metagenomic binning based on Hi-C data
Organization: koszullab
Home Page: https://research.pasteur.fr/fr/software/meta3c-metahic/
hi-c,Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
Organization: kundajelab
hi-c,Customizable workflows based on snakemake and python for the analysis of NGS data
Organization: maxplanck-ie
Home Page: http://snakepipes.readthedocs.io
hi-c,Analysis of Chromosome Conformation Capture data (Hi-C)
Organization: nf-core
Home Page: https://nf-co.re/hic
hi-c,A cool place to store your Hi-C
Organization: open2c
Home Page: https://open2c.github.io/cooler
hi-c,A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
Organization: open2c
hi-c,flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)
Organization: open2c
hi-c,Chromosome polymer simulations and in silico capture experiments
Organization: open2c
hi-c,Adjacency-constrained hierarchical clustering of a similarity matrix
User: pneuvial
Home Page: https://pneuvial.github.io/adjclust/
hi-c,Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Organization: qdata
hi-c,Genome Contact Map Explorer - gcMapExplorer. Visit:
User: rjdkmr
Home Page: http://gcmapexplorer.readthedocs.io/
hi-c,GENome Organisation Visual Analytics
User: robinweide
hi-c,Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
User: tanghaibao
hi-c,C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
User: tanjimin
hi-c,Comparison of Hi-C Experiments using Structural Similarity.
Organization: vaquerizaslab
hi-c,An easy-to-use Hi-C data processing software supporting distributed computation.
User: xiaotaowang
Home Page: http://xiaotaowang.github.io/HiC_pipeline/index.html
hi-c,A fast and efficient tool for converting chromatin interaction data between genome assemblies
User: xiaotaowang
hi-c,A Python implementation for BH-FDR and HiCCUPS
User: xiaotaowang
hi-c,A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
User: xiaotaowang
hi-c,A toolkit for analyzing architectural stripes
User: xiaotaowang
hi-c, A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
User: xiaotaowang
hi-c,Accurate and flexible loops calling tool for 3D genomic data.
User: yaqiangcao
Home Page: https://yaqiangcao.github.io/cLoops/
hi-c,Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
User: yaqiangcao
hi-c,HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
User: zengxiaofei
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