Topic: molecular-biology Goto Github

👇 Here are 132 public repositories matching this topic...

3dem / relion
molecular-biology,Image-processing software for cryo-electron microscopy
Organization: 3dem
Home Page: https://relion.readthedocs.io/en/latest/
microscopy cryo-em hpc cuda image-processing biomolecular-dynamics molecular-biology molecular-structures atomistic-models ctf

anocca-ab / sequence-viewer
molecular-biology,A DNA and protein sequence viewer developed and maintained by Anocca
Organization: anocca-ab
Home Page: https://anocca-ab.github.io/sequence-viewer/
sequence-viewer molecular-biology dna protein-sequences mit-license

bebop / poly
molecular-biology,A Go package for engineering organisms.
Organization: bebop
Home Page: https://pkg.go.dev/github.com/bebop/poly
synthetic-biology synbio genetic-engineering molecular-biology bioengineering computational-biology bioinformatics dna fasta genbank

bimsbbioinfo / compass
molecular-biology,Official Implementation of Compass
Organization: bimsbbioinfo
Home Page: https://arxiv.org/abs/2406.06841
binding-affinity drug-discovery drug-target-interactions molecular-biology molecular-docking protein-ligand-interactions

biodasturchi / docs
molecular-biology,📡 Biodasturchi blog website
Organization: biodasturchi
Home Page: https://docs-8wz1mptd9-biodasturchi.vercel.app/
typescript vitepress-blog vue molecular-biology molecular-docking molecular-dynamics

bluebrain / bioexplorer
molecular-biology,The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
Organization: bluebrain
Home Page: https://portal.bluebrain.epfl.ch/resources/software/exploration/
covid19 raytracing coronavirus science molecular-biology virus sars-cov-2 viral-infection glucose-levels immune-system virology rendering-engine neuron astrocyte brain dti neuroimaging neurosimulation vasculature python

bojarlab / glycowork
molecular-biology,Package for processing and analyzing glycans and their role in biology.
Organization: bojarlab
Home Page: https://Bojarlab.github.io/glycowork
machine-learning glycobiology glycans bioinformatics python computational-biology data-science molecular-biology open-source glycomics

bpucker / teaching
molecular-biology,This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
User: bpucker
Home Page: https://www.tu-braunschweig.de/en/ifp/pbb
teaching peer-review genomics transcriptomics rna-seq sequencing python2 python3 molecular-biology pcr

ccozens / mol-bio-tools
molecular-biology,Molecular biology x React = webpage for: transcribe DNA to RNA, reverse complement, protein translation, compute protein parameters
User: ccozens
Home Page: https://creative-cocada-575991.netlify.app/
dna molecular-biology reactjs rna transcription translation

cryoem-uoft / cryosparc-tools
molecular-biology,Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
Organization: cryoem-uoft
Home Page: https://tools.cryosparc.com
cryo-em cryosparc python c cryosparc-tools high-performance-computing image-processing molecular-biology

cryoem-uoft / cryosparc2_public
molecular-biology,CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
Organization: cryoem-uoft
Home Page: https://cryosparc.com/docs/reference/install/
cryo-em microscopy image-processing molecular-biology high-performance-computing

danielschuette / cloningprimer
molecular-biology,Web App, CLI, and API for designing cloning primer pairs - written in Go👩🏼‍🔬👨🏼‍🔬
User: danielschuette
Home Page: http://www.cloningprimer.com
go molecular-biology biology-lab-protocols cloning primer-design genetics

dlesl / clonifier
molecular-biology,A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly
User: dlesl
Home Page: https://dlesl.github.io/clonifier/
genome-browser molecular-biology react rust webassembly

dvklopfenstein / reactomepy
molecular-biology,Explore biomolecular pathways in Reactome from the command-line or a Python script
User: dvklopfenstein
reactome reactome-pathway biological-networks molecular-biology pathway-enrichment-analysis pathway-analysis biotechnology biotech bioinformatics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts bioinformatics-tool pathway-models protein-protein-interaction

edinburgh-genome-foundry / bandwagon
molecular-biology,🎺 Plot DNA digestion band patterns with Python
Organization: edinburgh-genome-foundry
Home Page: http://edinburgh-genome-foundry.github.io/BandWagon/
dna synthetic-biology molecular-biology agarose-gel plotting

edinburgh-genome-foundry / caravagene
molecular-biology,🎨 Python library to plot multi-part genetic constructs
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/Caravagene/
synthetic-biology molecular-biology sequence-design dna-assembly

edinburgh-genome-foundry / crazydoc
molecular-biology,Read DNA sequences from colourful Microsoft Word documents
Organization: edinburgh-genome-foundry
molecular-biology synthetic-biology dna-sequences computer-aided-design bioinformatics

edinburgh-genome-foundry / dnacauldron
molecular-biology,:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaCauldron/
cloning-simulator dna-assembly golden-gate molecular-biology synthetic-biology

edinburgh-genome-foundry / dnafeaturesviewer
molecular-biology,:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Organization: edinburgh-genome-foundry
Home Page: https://edinburgh-genome-foundry.github.io/DnaFeaturesViewer/
genbank visualization synthetic-biology molecular-biology bioinformatics dna-visualization

emmawahl / facepai
molecular-biology,Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
User: emmawahl
bioinformatics bioinformatics-pipeline bioinformatics-scripts biology dna-barcode dna-sequences environmental-dna molecular-biology

fsestini / zsyntax
molecular-biology,Automated theorem prover for a linear logic-based calculus for molecular biology.
User: fsestini
automated-deduction linear-logic molecular-biology theorem-proving

hrshainik / biofidelicx-diary
molecular-biology,biofidelicX diary is the ideal location to stay informed and up-to-date on the most recent research and discoveries in bio-science, whether you're a student, a scientist, or simply someone with a passion for learning about the natural world.
User: hrshainik
Home Page: https://biofidelicx-diary.vercel.app
biochemistry blog blog-site genetics molecular-biology nextjs-blog-app nextjs react tailwindcss

hyeshik / tailseeker
molecular-biology,Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
User: hyeshik
transcriptome rna-seq snakemake molecular-biology mrna polya-tail pipeline

j-w-yun / plasmid-planner
molecular-biology,Automatically plan the most optimal expression vector using restriction enzymes.
User: j-w-yun
molecular-biology plasmid-sequences plasmid microbiology dna-sequences cloning restriction-enzyme

jlikhuva / blog
molecular-biology,A collection of detailed notes and random thoughts.
User: jlikhuva
computer-science algorithms computational-biology reinforcement-learning molecular-biology data-structures systems-biology

johnnytam100 / awesome-protein-design
molecular-biology,A curated list of awesome protein design research, software and resources.
User: johnnytam100
alphafold alphafold-multimer alphafold2 bioinformatics bioinformatics-tool molecular-biology protein-design protein-function protein-sequence protein-structure

jvrana / dasi-dna-design
molecular-biology,A Python molecular biology CAD tool with a dead-simple user interface
User: jvrana
Home Page: https://jvrana.github.io/DASi-DNA-Design/
bioinformatics biotechnology cad dna molecular-biology synthetic-biology

jvrana / primer3-py-plus
molecular-biology,A easy-to-use Python API for Primer3 primer design.
User: jvrana
Home Page: https://jvrana.github.io/primer3-py-plus/.
biodesign dna molecular-biology biocad

koeng101 / dnadesign
molecular-biology,A Go package for designing DNA.
User: koeng101
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology

lightdock / lightdock
molecular-biology,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
protein protein-structure protein-protein-interaction protein-docking swarm-intelligence glowworm-swarm-optimization protein-dna-interactions peptides dna docking

m-jahn / shinymc
molecular-biology,R Shiny based interface for monitoring bioreactors
User: m-jahn
r r-programming shiny-apps molecular-biology reactor-control visualization

mahshaaban / pcr
molecular-biology,Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data
User: mahshaaban
Home Page: https://CRAN.R-project.org/package=pcr
qpcr data-analyses molecular-biology

mims-harvard / pathways
molecular-biology,Disease pathways in the human interactome
Organization: mims-harvard
Home Page: http://snap.stanford.edu/pathways
network-analysis network-science molecular-biology interactome pathway-analysis pathway-prediction

motrpac / motrpacrattraining6modata
molecular-biology,Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
Organization: motrpac
Home Page: https://motrpac.github.io/MotrpacRatTraining6moData
data molecular-biology multi-omics-data r

pallada-92 / dna-3d-engine
molecular-biology,3d engine implementation in DNA code!
User: pallada-92
Home Page: https://observablehq.com/@pallada-92/3d-engine-in-dna-code
dna piperine strand-displacement chemical-reaction-networks chemical-kinetics chemical-reactions in-vitro molecular-programming molecular-biology biology

paulstothard / sequence_manipulation_suite
molecular-biology,A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
User: paulstothard
Home Page: https://paulstothard.github.io/sequence_manipulation_suite/
molecular-biology dna-processing protein-sequences sequence-analysis

pombo-lab / gamtools
molecular-biology,Processing, quality control and analysis of GAM datsets
Organization: pombo-lab
Home Page: http://gam.tools
python python3 python2 molecular-biology high-throughput-sequencing chromatin

qcb-collaboratory / w17.machinelearning
molecular-biology,Course material for the Collaboratory Workshop "Machine Learning with Python"
Organization: qcb-collaboratory
Home Page: https://qcb.ucla.edu/collaboratory/workshops/machinelearning/
workshop workshop-materials machine-learning biology molecular-biology

qlslab / extaxsi
molecular-biology,Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic informations.
Organization: qlslab
bioinformatics ecology visualization molecular-biology molecular data taxonomic-classifications taxonomy-database taxonomy python

ryantkoehler / rtpcr_viewer
molecular-biology,Real-time PCR data viewer (Python 3 GUI with wxPython)
User: ryantkoehler
pcr molecular-biology data-analysis gui-application wxpython

saezlab / mistyr
molecular-biology,Multiview Intercellular SpaTial modeling framework
Organization: saezlab
Home Page: https://saezlab.github.io/mistyR/
multiview intercellular spatial modular biology molecular-biology r spatial-transcriptomics machine-learning bioconductor

saezlab / pypath
molecular-biology,Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
Organization: saezlab
Home Page: http://omnipathdb.org/
python pathway resource database network genetic-regulatory-network molecular-biology

sdhutchins / labrat
molecular-biology,A basic science lab framework aimed at reproducibility and lab management.
User: sdhutchins
genetics science laboratory laboratory-automation psychiatry molecular-biology lab gui labrat python

shiwentao00 / graphsite-classifier
molecular-biology,Ligand-binding site classification with deep graph neural networks.
User: shiwentao00
deeplearning pytorch biochemistry graph-neural-network binding-sites binding-site-classification protein molecular-biology

sulab / wikigenomesbase
molecular-biology,A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Organization: sulab
Home Page: https://chlambase.org/
genetics bioinformatics database wikidata research annotation-tool website molecular-biology genomics proteomics

thecoderpinar / nanodna-nanorobot-simulation
molecular-biology, nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖
User: thecoderpinar
algorithms artificial-intelligence bioengineering bioinformatics biomedical-engineering computational-biology computational-modeling data-analysis dna machine-learning

timdecode / lifebrush
molecular-biology,A toolkit for painting agent-based mesoscale molecular simulations and illustrations.
User: timdecode
agent-based-modeling molecular-biology molecular-simulation procedural-generation texture-synthesis unreal-engine virtual-reality vr

v-z / course-r-mol-data
molecular-biology,R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
User: v-z
Home Page: https://trapa.cz/en/course-molecular-data-r-2022
r molecular-biology molecular-evolution course learning scripts scripting data-analysis data-visualization molecular-data

v-z / hybseq-scripts
molecular-biology,Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
User: v-z
Home Page: https://github.com/V-Z/hybseq-scripts
ngs-pipeline hybseq-data phylogenomics ngs data-science data-analysis molecular-biology paralogs bioinformatics-pipeline bioinformatics-scripts

v-z / sondovac
molecular-biology,Sondovač is a script to create orthologous low-copy nuclear probes from transcriptome and genome skim data for target enrichment. For latest version check "releases".
User: v-z
Home Page: https://github.com/V-Z/sondovac/wiki/
science phylogenetics ngs-pipeline ngs-analysis ngs genetics molecular-biology phylogenomics-pipeline phylogenomics pipeline