Topic: structural-bioinformatics Goto Github
Some thing interesting about structural-bioinformatics
Some thing interesting about structural-bioinformatics
structural-bioinformatics,This repo is dedicated to make bioinformatics resources available for anyone who wish to enter this field. (You may find it useful or not useful based on your level). I am still embarking my path in the field, just posting things based on my knowledge and the things which worked for me personally, they may/may not work with you, totally fine.
User: ahhmedsamehh
structural-bioinformatics,Command-line interface for ZEAL
Organization: andre-lab
structural-bioinformatics,My bachelors thesis on predicting relative protein-protein binding affinity changes upon point mutations using graph neural networks.
User: babaid
structural-bioinformatics,:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Organization: biojava
Home Page: https://biojava.org
structural-bioinformatics,A Julia package to read, write and manipulate macromolecular structures
Organization: biojulia
structural-bioinformatics,This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
User: carlocamilloni
structural-bioinformatics,Predicting the effect of mutations on protein stability using a simple orientational potential.
User: chaconlab
structural-bioinformatics,A Python framework for structural bioinformatics.
Organization: csb-toolbox
Home Page: https://doi.org/10.1093/bioinformatics/bts538
structural-bioinformatics,:wave: Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
Organization: cusbg
Home Page: http://apoholo.cz
structural-bioinformatics,PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Organization: deeprank
structural-bioinformatics,A Julia package to analyze protein sequences, structures, and evolutionary information
User: diegozea
Home Page: https://diegozea.github.io/MIToS.jl/stable/
structural-bioinformatics,Extract PDB entries annotated with specific GO codes
Organization: electrostatics
structural-bioinformatics,Convert between PDB and CIF formats
Organization: electrostatics
structural-bioinformatics,MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structures starting from a molecular dynamic trajectory.
User: framade
structural-bioinformatics,Protein-Protein Docking using Genetic Algorithm
Organization: gdocking
structural-bioinformatics,Visualizing the effect of SNPs on protein structure using iCn3D
Organization: hackathonismb
structural-bioinformatics,Cyclic-peptide - protein complexes benchmark and associated scripts and data
Organization: haddocking
structural-bioinformatics,Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Organization: haddocking
Home Page: https://www.bonvinlab.org
structural-bioinformatics,A dependency-free cross-platform swiss army knife for PDB files.
Organization: haddocking
Home Page: https://haddocking.github.io/pdb-tools/
structural-bioinformatics,Calculation of interatomic interactions in molecular structures
User: harryjubb
Home Page: http://biosig.unimelb.edu.au/arpeggioweb/
structural-bioinformatics,collect statistics from the entire PDB library
User: jewettaij
Home Page: http://www.moltemplate.org
structural-bioinformatics,A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
User: jgreener64
structural-bioinformatics,Benchmarking common tasks on proteins in various languages and packages
User: jgreener64
structural-bioinformatics,Generate and perturb protein structural ensembles using the ExProSE algorithm
User: jgreener64
structural-bioinformatics,A curated list of awesome protein design research, software and resources.
User: johnnytam100
structural-bioinformatics,Molecular simulation in Julia
Organization: juliamolsim
structural-bioinformatics,Python package to manage protein structures and their annotations
Organization: labstructbioinf
structural-bioinformatics,Course hometasks & additional links/materials on "Programming foundations for chemistry problems solving" - ITMO University, 2017 (some materials might be in Russian)
User: latticetower
structural-bioinformatics,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
structural-bioinformatics,The code from the paper "An automated protocol for modelling peptide substrates to proteases"
User: magnitov
structural-bioinformatics,A tool for analyzing RAS protein structures
User: mitch-parker
structural-bioinformatics,Script to facilitate the making of horizontal scripts
User: mooerslab
structural-bioinformatics,The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
User: mooerslab
structural-bioinformatics,Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
User: n-szulc
structural-bioinformatics,Structural Interactome pipeline
User: neksa
structural-bioinformatics,A fragment-based molecular assembly toolkit
User: noahhenrikkleinschmidt
structural-bioinformatics,A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions
User: orpowell
structural-bioinformatics,Clusters protein chains based on CA distance difference
Organization: pdbeurope
Home Page: https://pdbeurope.github.io/protein-cluster-conformers/
structural-bioinformatics,PACKMAN: PACKing and Motion ANalysis
User: pranavkhade
structural-bioinformatics,A bioinformatics algorithm for generating sequence alignments from 3D structures
Organization: rbvi
Home Page: http://www.cgl.ucsf.edu/Research/minrms
structural-bioinformatics,P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
User: rdk
Home Page: https://rdk.github.io/p2rank/
structural-bioinformatics,Partner specific prediction of protein binding sites
User: rsanchezgarc
structural-bioinformatics,Molstar as a react component
User: samirelanduk
Home Page: https://www.npmjs.com/package/molstar-react
structural-bioinformatics,Using VMD and NAMD for molecular dynamics simulation of protein PDB files.
User: sarah-hesham-2022
structural-bioinformatics,TCL-TK for VMD.
User: sarah-hesham-2022
structural-bioinformatics,Protein Visualization using Unity and C# analysis on PDB Files.
User: sarah-hesham-2022
structural-bioinformatics,SerenaRosi's GitHub page
User: serenarosi
structural-bioinformatics,Go library for parsing biological data formats and tool outputs from UniProt, PDB (Structure/Model/Chain/Residue/Atom - SMCRA), Pfam, DSSP, Fpocket and more. Plus: comparable position mappings!
User: tikz
Home Page: https://pkg.go.dev/github.com/tikz/bio
structural-bioinformatics,Web tool for the structural and functional analysis of human protein variants. https://varmed.qb.fcen.uba.ar
User: tikz
Home Page: https://varmed.qb.fcen.uba.ar
structural-bioinformatics,3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
User: yamule
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