Topic: whole-genome-sequencing Goto Github
Some thing interesting about whole-genome-sequencing
Some thing interesting about whole-genome-sequencing
whole-genome-sequencing,R-package to analyse and quantify aberrations in DNA-sequencing data
User: anasrana
whole-genome-sequencing,A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
User: aryarm
whole-genome-sequencing,JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
Organization: astrazeneca-cgr-publications
whole-genome-sequencing,PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Organization: bu-isciii
Home Page: https://github.com/BU-ISCIII/plasmidID/wiki
whole-genome-sequencing,An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Organization: ccbr
whole-genome-sequencing,a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.
User: christacaggiano
whole-genome-sequencing,BACTpipe: An assembly and annotation pipeline for bacterial genomics
Organization: ctmrbio
Home Page: https://bactpipe.readthedocs.org
whole-genome-sequencing,As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
User: denniepatton
whole-genome-sequencing,Genomic data manipulation tool
Organization: doublehelixapp
Home Page: https://doublehelix.app
whole-genome-sequencing,Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
User: edgardomortiz
Home Page: https://edgardomortiz.github.io/captus.docs/
whole-genome-sequencing,R tools to mine & craft somatic mutations from cancer genomes
User: emiliet
whole-genome-sequencing,Whole Genome Sequencing analysis, WGS analysis
User: flowhub-team
whole-genome-sequencing,Workflows for whole-genome/exome sequencing data analysis
Organization: genemap-research
Home Page: https://genemap-research.github.io/docs/workflows/ngs/
whole-genome-sequencing,WDL-based pipelines
Organization: genomicsiter-developers
whole-genome-sequencing,A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
Organization: giovannellilab
Home Page: https://giovannellilab.github.io/Geomosaic/
whole-genome-sequencing,cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
User: hw538
whole-genome-sequencing,Whole Exome/Whole Genome Sequencing alignment pipeline
Organization: iarcbioinfo
whole-genome-sequencing,An in silico tool to predict Shigella serotypes
User: imanyass
whole-genome-sequencing,A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
User: jlumpe
whole-genome-sequencing,Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
User: joelewis101
Home Page: https://joelewis101.github.io/blantyreESBL/
whole-genome-sequencing,Viral genome assembly pipeline for WGS using ONT
Organization: khourious
whole-genome-sequencing,PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
User: kiranjavkar
whole-genome-sequencing,Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Organization: krasnitzlab
Home Page: https://krasnitzlab.github.io/RAIDS/
whole-genome-sequencing,Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
User: kstawiski
whole-genome-sequencing,An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
Organization: li-lab-genetics
whole-genome-sequencing,An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
Organization: li-lab-genetics
whole-genome-sequencing,Bacterial whole genome sequencing (WGS) analysis
User: nadjakry
whole-genome-sequencing,Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Organization: nanoporetech
whole-genome-sequencing,Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Organization: nf-core
Home Page: https://nf-co.re/sarek
whole-genome-sequencing,Analysis and plotting functions for structural variant breakpoint data
User: nriddiford
whole-genome-sequencing,Clinical Whole Genome and Exome Sequencing Pipeline
Organization: openomics
Home Page: https://openomics.github.io/genome-seek/
whole-genome-sequencing,Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
User: pblaney
Home Page: https://pblaney.github.io/mgp1000-docs/
whole-genome-sequencing,GREMLIN: Genomic REarrangements by Machine Learning-based INspection
User: phansol
whole-genome-sequencing,Detect novel (and reference) STR expansions from short-read data
Organization: quinlan-lab
whole-genome-sequencing,Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
User: rwk-unil
whole-genome-sequencing,Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
User: rx32940
whole-genome-sequencing,Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
User: sdhutchins
whole-genome-sequencing,A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
User: shujiahuang
whole-genome-sequencing,A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
User: supermaxiste
whole-genome-sequencing,vcfdist: Accurately benchmarking phased variant calls
User: timd1
whole-genome-sequencing,SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
User: tobiasrausch
whole-genome-sequencing,vSNP -- validate SNPs
Organization: usda-vs
whole-genome-sequencing,vSNP -- validate SNPs
Organization: usda-vs
whole-genome-sequencing,An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
User: xihaoli
whole-genome-sequencing,An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
User: xihaoli
whole-genome-sequencing,An R package for performing STAAR procedure in whole-genome sequencing studies
User: xihaoli
whole-genome-sequencing,An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
User: xihaoli
whole-genome-sequencing,The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
User: xihaoli
whole-genome-sequencing,An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
User: xihaoli
whole-genome-sequencing,Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
User: zjnolen
Home Page: https://zjnolen.github.io/PopGLen/
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