Topic: population-structure Goto Github
Some thing interesting about population-structure
Some thing interesting about population-structure
population-structure,GWAS on rice RNA seq data, features use of statgenGWAS, and experimentation with different methods of pop. structure control
User: aangush
population-structure,Genetic Ancestry
User: ahmedmoustafa
population-structure,Repository for "Hybridization and inbreeding affect the survival of a critically endangered coral"
User: aihagreda
population-structure,Data analysis on natural movement of the population in Romania
User: ana-iordache
population-structure,vk.com community members sex and age distribution (population pyramid)
User: annndruha
population-structure,Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference
User: bguo068
population-structure,Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
User: bguo068
population-structure,Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
User: btmartin721
population-structure,A data clustering package based on admixture ratios (Q matrix) of population structure analysis.
User: darkeyes
population-structure,strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
User: ericarcher
population-structure,Fine-scale genetic structure in South Western Cameroon
User: esohkevin
population-structure,Mutual nearest neighbor graphs for population structure inference and visualization :octopus:
User: esteinig
population-structure,rhierbaps: R implementation of hierBAPS
User: gtonkinhill
population-structure,BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
User: hwittich
population-structure,STAT488 - Multivariate Statistics final project at Loyola University Chicago
User: hwittich
population-structure,In this article, we introduce Mycorrhiza, a machine learning approach for the genotype assignment problem. Our algorithm makes use of phylogenetic networks to engineer features that encode the evolutionary relationships among samples.
User: jgeofil
Home Page: https://doi.org/10.1093/bioinformatics/btz476
population-structure,Binary trait Resampling method Adjusting for Sample Structure
User: joellesophya
population-structure,Scripts for file processing and analysis in phylogenetics and phylogeography
User: justincbagley
population-structure,Scripts and notes related to the manuscript: Stuart KC & Cardilini APA 2021 Signatures of selection in a recent invasion reveal adaptive divergence in a highly vagile invasive species. Molecular Ecology 30(6):1419-1434, doi.org/10.1111/mec.15601 † joint first author ‡ joint last author.
User: katarinastuart
population-structure,Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.
User: ksil91
population-structure,Plague Global Phylogeny Manuscript
User: ktmeaton
Home Page: https://ktmeaton.github.io/plague-global-phylo-paper
population-structure,A comprehensive tutorial about GWAS and PRS
User: mareesat
population-structure,Collection of materials for teaching about autoencoders
User: mkierczak
population-structure,This study assessed the spatial genetic variation in P. falciparum populations in Mali
User: mpb-mrcg
population-structure,A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
User: msesia
Home Page: https://msesia.github.io/knockoffgwas
population-structure,R implementation of the BAPS software for Bayesian Analysis of Population Structure
Organization: ocbe-uio
Home Page: http://www.helsinki.fi/bsg/software/BAPS/
population-structure,R-markdown script for geographic population genetic structure analysis with Tess3r
User: pamorin
population-structure,
User: pommevilla
population-structure,Quantitative Trait Cluster Association Test in R
Organization: qtcat
population-structure,Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"
User: rorycraig337
population-structure,Crowdfunding Data Analysis
User: roshniranads27
population-structure,An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
User: royfrancis
Home Page: http://royfrancis.github.io/pophelper/
population-structure,Interactive interface for pophelper using shiny web framework.
User: royfrancis
Home Page: http://royfrancis.github.io/pophelperShiny/
population-structure,starmie: plotting and inference for population structure models :star2:
User: sa-lee
population-structure,An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
User: solelena
population-structure,Tutorial for visualising admixture on a map
User: tom-jenkins
population-structure,R package and web app for spatial visualisation of admixture on a projected map
User: tom-jenkins
population-structure,A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.
Organization: tuks-icmm
population-structure,R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
User: v-z
Home Page: https://trapa.cz/en/course-molecular-data-r-2022
population-structure,Population Structured Bayesian Epistasis Association Mapping
User: vahidheidari
population-structure,STRUCTURE and ROLLOFF reimplementations for CS 4775 (Computational Genetics and Genomics)
User: veeara282
population-structure,This repository if for creating auto-encoders easily. The main focus of the auto-encoders on this page is for genetic and spectral data analysis but likely could be used for any high dimensional data
Organization: zhiwu-zhang-lab
population-structure,Imputation and Admixture for lcWGS in one goal
User: zilong-li
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