Topic: snv Goto Github
Some thing interesting about snv
Some thing interesting about snv
snv,xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
User: adigorla
snv,An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
User: anbianchi
Home Page: https://github.com/anbianchi/IntegratedSNVINDELSandCNV
snv,Front-End for SNV Business firm
User: ashudva
Home Page: http://www.snvbusiness.com/
snv,In this repository I backup the pipelines I write for the project I am involved
User: auroramaurizio
snv,WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
User: auroramaurizio
snv,🌳 Human ancestry inference from genomic data
Organization: bcgsc
Home Page: https://github.com/bcgsc/ntRoot
snv,Cell Line Authentication from ChIP-seq data
User: bdolmo
snv,Dockstore implementation of CGP core WGS analysis
Organization: cancerit
snv,Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.
Organization: computational-genomics-bsc
snv,a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
Organization: ghga-de
snv,Note: This is a detailed Intro to this project. A brief users guide can be found at users_guide.md
User: jiatuya
snv,GATK WGS workflow
User: laura-budurlean
Home Page: https://github.com/laura-budurlean/GATK-WGS-Pipeline
snv,maftools for SNV mutation analysis, summarizes, and visualization
User: mahsa-ehsanifard
Home Page: https://mahsa-ehsanifard.github.io/maftools/
snv,Python wrapper and web-server for Ensembl VEP
User: maxim-k
Home Page: https://amp.pharm.mssm.edu/PyVEP
snv,Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
Organization: nci-cgr
snv,Call and score variants from WGS/WES of rare disease patients.
Organization: nf-core
Home Page: https://nf-co.re/raredisease
snv,Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
User: nickveltmaat
snv,Extract and explore snv data
User: nriddiford
snv,vue app with flask REST api to process genomic data
User: petermchale
snv,A simple module for diagnostic variant information parsing
Organization: qbicsoftware
snv,This guide outlines a step-by-step process for managing your WordPress plugin to add/update in the WordPress repository using SVN (Subversion). SVN is a version control system that helps you track changes, collaborate with others, and maintain a history of your project.
User: shewa12
Home Page: https://github.com/shewa12/svn-guide-to-upload-wp-plugin
snv,Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
User: tc-hewitt
snv,acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
Organization: tnturnerlab
Home Page: https://pubmed.ncbi.nlm.nih.gov/37660114/
snv,Estimates the clonal population structure in a tumour sample given a cell mutation matrix
User: tommakesthings
snv,Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
User: waqasuddinkhan
Home Page: http://www.genmed.fr/images/publications/data/MACARON_GenMed.zip
snv,Convert output from Samtools pileup into a matrix.
User: wennj
snv,Genome assembly and variant benchmarks for Chinese Quartet
Organization: xjtu-omics
snv,cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Organization: xwanglabthu
Home Page: https://xwanglabthu.github.io/cfDNApipe/
snv,Data management of large-scale whole-genome sequence variant calls (Development version only)
User: zhengxwen
Home Page: http://www.bioconductor.org/packages/SeqArray
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