Topic: amplicon-sequencing Goto Github
Some thing interesting about amplicon-sequencing
Some thing interesting about amplicon-sequencing
amplicon-sequencing,AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
User: abhijeetsingh1704
amplicon-sequencing,Workflow and R scripts for Giongo et al. (2024)
User: adrianagiongo
amplicon-sequencing,Study of cyanobacterial harmful algal blooms in Lake Erie using autonomous sampling and DNA sequencing
Organization: aomlomics
amplicon-sequencing,Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
User: aveglia
amplicon-sequencing,QIIME2 worklflow. From raw data to a feature table.
User: biomarv
amplicon-sequencing,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
amplicon-sequencing,Microbial Community Analysis with Chipster
Organization: csc-training
amplicon-sequencing,Here we discuss strategies and workflows to analyse metagenomics datasets
User: digo4
amplicon-sequencing,This repository contains R scripts for data analyses and visualization.
User: dixit-kunal
amplicon-sequencing,:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
User: erictleung
amplicon-sequencing,Interactive application to explore various ecological diversity metrics
User: erictleung
Home Page: https://erictleung.shinyapps.io/shinydiversity
amplicon-sequencing,READY TO USE. Repository containing guidelines and templates for archiving amplicon sequencing data with ESS-DIVE repository.
Organization: ess-dive-community
Home Page: https://ess-dive.gitbook.io/amplicon-sequencing-reporting-format/
amplicon-sequencing,CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
User: flefler
amplicon-sequencing,In-silico PCR, primer design and padlock design for in-situ sequencing
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/
amplicon-sequencing,hamPCR + Douglas-fir + needle fungi
User: gerverska
amplicon-sequencing,Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Organization: grimmlab
Home Page: https://www.bit.cs.tum.de/
amplicon-sequencing,Utilities for analysis of multiplex amplicon sequencing data
User: gtseq
amplicon-sequencing,SCRAPT: An Iterative Algorithm for Clustering Large 16S rRNA Gene Datasets
User: hsmurali
amplicon-sequencing,The impact of transitive annotation on the training of taxonomic classifiers
User: hsmurali
amplicon-sequencing,MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
User: jinhuili-lab
Home Page: https://jinhuili-lab.github.io/
amplicon-sequencing,This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
User: johannabosch
amplicon-sequencing,Course repository for Environmental microbiology course (MMB-117) at the University of Helsinki.
User: karkman
amplicon-sequencing,Tools for visualising microbial community amplicon data
User: kasperskytte
Home Page: https://kasperskytte.github.io/ampvis2/
amplicon-sequencing,A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
User: kevin-wamae
amplicon-sequencing,Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data
User: kohyamat
amplicon-sequencing,Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).
User: marius44
amplicon-sequencing,
User: maurerv
amplicon-sequencing,R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
User: microsud
amplicon-sequencing,A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
User: microsud
Home Page: https://microsud.github.io/Tools-Microbiome-Analysis/
amplicon-sequencing,Metagenomics calibration R package
User: mikemc
Home Page: https://mikemc.github.io/metacal
amplicon-sequencing,Analysis for McLaren, Willis, and Callahan (2019)
User: mikemc
Home Page: https://doi.org/10.7554/eLife.46923
amplicon-sequencing,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
amplicon-sequencing,microhaplotype visualizer and analyzer
User: ngthomas
Home Page: https://ngthomas.github.io/microhaplot
amplicon-sequencing,Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
Organization: nioo-knaw
amplicon-sequencing,Building a pipeline for automated 16S analysis from paired short-reads or long-reads
Organization: nucleomics-vib
amplicon-sequencing,A snakemake pipeline for amplicon (16S, 18S, ITS) sequence analysis using Usearch.
User: olabiyi
amplicon-sequencing,This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
Organization: pombertlab
amplicon-sequencing,Statistical and Computational methods for Microbiome Studies.
User: ricket-sjtu
amplicon-sequencing,A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Organization: rivm-bioinformatics
Home Page: https://rivm-bioinformatics.github.io/AmpliGone/
amplicon-sequencing,Various functions for analysis of microbial community data
User: russel88
amplicon-sequencing,metagenome simulation for targeted and reduced-representation sequencing
User: ryandkuster
amplicon-sequencing,Primer scripts to produce meaningful visualisations from pre-processed metabarcoding data
User: s-myles
amplicon-sequencing,This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequences.
User: tianrenmao
amplicon-sequencing,Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
Organization: traxlerlab
Home Page: https://doi.org/10.1101/2022.04.15.488482
amplicon-sequencing,Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
Organization: treangenlab
Home Page: https://doi.org/10.1101/2023.02.11.528155
amplicon-sequencing,Analysis of amplicon sequencing data with synthetic spike-in standards
User: vmikk
amplicon-sequencing,a set of tools for viral amplicon schemes
User: will-rowe
amplicon-sequencing,This is repository of amplicon sequencing data and bioinformatics pipeline codes for the nectar microbiome of Monkey Flowers.
User: yingtongaamandawu
amplicon-sequencing,A web app for environmental DNA metabarcoding analysis
User: yoann-dufresne
amplicon-sequencing,Repo for scripts/codes applied in my studies
User: yuqing-feng
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